Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.3  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   5.2  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   5.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   5.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 231 EHRYYGESKPFGNKSLEKEYIGYL 302
           E +Y GES P G   L ++Y+ YL
Sbjct: 92  ERQYDGESSPKGYSDLIRDYVDYL 115


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 386 SFWRLVWWNVSCLYKDKVSPPSGRSYSRLSSHTH 487
           +FWR  W+    +    +  PSGR  S  ++H H
Sbjct: 106 AFWRGDWYVGKGVATASLQHPSGRIISLFNTHLH 139


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +3

Query: 102 MKIVLQILSLQRHRLSGQIEAFANYTGFMWEIAAEYQAKIVFAE-HRYYGESKPFGNKSL 278
           ++ +L   ++     S Q +AFA+       ++ E    +V  + H  Y  S P   KS+
Sbjct: 78  LQTLLSNANIMSDGASSQNDAFAHNPST--SVSVELVRPVVGTKKHAVYATSAP---KSM 132

Query: 279 EKEYIGYLTSAQALADYADLINYLQK 356
             +    + SA ALAD +  +NY +K
Sbjct: 133 SLQDSLSVPSATALADVSSSLNYSRK 158


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 333 DLINYLQKDEIKPRYPVI 386
           D ++++QKDE +P+ PV+
Sbjct: 687 DKLHFVQKDESRPKEPVV 704


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 169 PITPASCGR*RLNIKPRLFSQSTDIMESPSLLVTSPWKKSTLGTSRQPRH 318
           P    +  + ++NI+    S+ T IM SP+   +     ST G S Q  H
Sbjct: 299 PFPSENANKTQINIENATCSKMTWIMGSPTKEKSQWGSVSTTGVSNQQNH 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,986
Number of Sequences: 5004
Number of extensions: 49438
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)