Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 105 3e-26
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 111 4e-25
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 74 8e-14
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 70 1e-12
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 31 0.56
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 30 0.98
06_03_1219 - 28491185-28494415 28 5.2
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 27 9.1
03_01_0492 - 3724798-3724944,3725118-3725223,3726573-3726664,372... 27 9.1
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018... 27 9.1
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 27 9.1
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 105 bits (252), Expect(2) = 3e-26
Identities = 50/90 (55%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Frame = +3
Query: 231 EHRYYGESKPFGNKSL---EKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGS 401
+HRYYGES PFG+K + + YLT+ QALADYA L+ L+K+ PV+ FGGS
Sbjct: 160 QHRYYGESMPFGSKDKAYNNSKSLAYLTAEQALADYAVLLTDLKKNLSSEGSPVVLFGGS 219
Query: 402 YGGMLAAYIRIKYPHLVAGAIAASAPIHMF 491
YGGMLAA++R+KYPH+ GA+A+SAPI F
Sbjct: 220 YGGMLAAWMRLKYPHIAVGALASSAPILQF 249
Score = 30.3 bits (65), Expect(2) = 3e-26
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 150 GQIEAFANYTGFMWEIAAEYQAKIVFAE 233
G I FA +G +WE A + A +VFAE
Sbjct: 101 GDIAWFAANSGLVWEAATRFAALVVFAE 128
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 111 bits (266), Expect = 4e-25
Identities = 53/92 (57%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Frame = +3
Query: 231 EHRYYGESKPFGNKSLEK-EYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGSYG 407
+HR+YGESKPFGN+S E +GYLTS QALAD+A LI L+ + PV+ FGGSYG
Sbjct: 143 QHRFYGESKPFGNESNSSPEKLGYLTSTQALADFAVLITSLKHNLSAVSSPVVVFGGSYG 202
Query: 408 GMLAAYIRIKYPHLVAGAIAASAPIHMFPGMT 503
GMLA++ R+KYPH+ GA+A+SAPI F +T
Sbjct: 203 GMLASWFRLKYPHVTIGAVASSAPILQFDYIT 234
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 73.7 bits (173), Expect = 8e-14
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Frame = +3
Query: 195 IAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPR 374
+A ++ A +V EHRYYG+S PF +SL E + +L+S QAL D A Y Q + + +
Sbjct: 128 MAKKFGAAVVSPEHRYYGKSSPF--ESLTTENLRFLSSKQALFDLAVFRQYYQ-ETLNAK 184
Query: 375 Y-------PVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASAPI 482
Y FGGSY G L+A+ R+K+PHL G++A+S +
Sbjct: 185 YNRSGADSSWFVFGGSYAGALSAWFRLKFPHLTCGSLASSGVV 227
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 69.7 bits (163), Expect = 1e-12
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Frame = +3
Query: 141 RLSGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQAL 320
R+ G+ ++ ++ ++ A +V EHRYYG+S PF +SL E + +L+S QAL
Sbjct: 90 RICGESSCNGIPNDYLAVLSKKFGAAVVTPEHRYYGKSSPF--ESLTTENLRFLSSKQAL 147
Query: 321 ADYADLINYLQKDEIKPRY--------PVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASA 476
D + Q + + RY P FG SY G L+A+ R+K+PHL G++A+S
Sbjct: 148 FDLVAFRQHYQ-EILNARYNRSSGFDNPWFVFGVSYSGALSAWFRLKFPHLTCGSLASSG 206
Query: 477 PI 482
+
Sbjct: 207 VV 208
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 207 YQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEI 365
Y + F H + P G SL + +T ALA YADL+N +K +
Sbjct: 371 YSPEAFFTIHADKEDGTPLGGGSLAPPFPSPITVRNALARYADLLNSPKKSAL 423
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 378 PVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASA 476
PV G S GG ++ Y+ PHLV G +A
Sbjct: 338 PVYIVGNSLGGFVSLYLAASCPHLVKGVTLLNA 370
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 144 LSGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYGESKP 260
LS I +F N +G W + + + +YGE+ P
Sbjct: 401 LSLTINSFVNISGMFWNLKGCTSLTALLVSYNFYGEALP 439
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 187 CGR*RLNIKPRLFSQSTDIMESPSLLVTSPWKKSTLGTSRQPRHWLTMPTS 339
C R+ K R T I LLVT WK+S + R W+ T+
Sbjct: 788 CFSVRIRFK-RQIQNITTIQAVARLLVTGIWKRSVIVIQAHVRGWIARQTA 837
>03_01_0492 -
3724798-3724944,3725118-3725223,3726573-3726664,
3727238-3727276,3727491-3727847
Length = 246
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +1
Query: 214 PRLFSQSTDIMESPSLLVTSPWKKSTLGTSRQPRHWLTMPTSSITFKKMKSNP 372
PR + S++ P ++ W+K+ R P W ++ F+K+ P
Sbjct: 52 PRPSASSSEPRSFPYVVKQRCWEKAERVAGRDPERWRRDALGNVVFRKLVGCP 104
>02_02_0501 -
10999203-10999754,11000724-11001460,11001461-11001836,
11001917-11001946,11002718-11002912,11003604-11004149
Length = 811
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 348 LQKDEIKPRYPVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASAPIHMFPG 497
++K KP + + +G SYGG L+A ++P + A+ + AP+ + G
Sbjct: 665 IKKGLAKPGH-IGLYGWSYGGFLSAMCLARFPDTFSCAV-SGAPVTAWDG 712
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 27.1 bits (57), Expect = 9.1
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = +3
Query: 207 YQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVI 386
YQ K + E + ES +G K L + I LT A Y ++I +L I V+
Sbjct: 101 YQGKSPYQEVLVF-ESSTYG-KVLVLDGIVQLTDKDECA-YQEMITHLPLCSIPSPKKVL 157
Query: 387 AFGGSYGGMLAAYIR 431
GG GG+L R
Sbjct: 158 VIGGGDGGVLREICR 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,786
Number of Sequences: 37544
Number of extensions: 330649
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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