Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33) 128 2e-30
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 87 6e-18
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 69 2e-12
SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_32432| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034) 29 2.3
SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7) 27 9.4
SB_14343| Best HMM Match : PAN (HMM E-Value=3.4e-05) 27 9.4
>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
Length = 1224
Score = 128 bits (310), Expect = 2e-30
Identities = 60/118 (50%), Positives = 81/118 (68%)
Frame = +3
Query: 150 GQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADY 329
G I F +GF++E A + A ++F EHRYYGES PFG S + E IGYL+ QALAD+
Sbjct: 69 GGITGFWENSGFVFEAAKNFSALVIFGEHRYYGESLPFGQDSFKIENIGYLSIEQALADF 128
Query: 330 ADLINYLQKDEIKPRYPVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASAPIHMFPGMT 503
A LI L+K PV++FGGSYGGML+AY+R KYP+++ A+AASAPI+ ++
Sbjct: 129 ATLIPALKKQFKAEEKPVVSFGGSYGGMLSAYLRFKYPNVIQAALAASAPIYFIADLS 186
>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 563
Score = 87.4 bits (207), Expect = 6e-18
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Frame = +3
Query: 180 GFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQ-K 356
G + +IA EY A + EHRYYG+S FG L+ + + YL+S ALAD A + + + K
Sbjct: 168 GHIVDIAKEYGALLFAVEHRYYGKSNFFG--CLKTKNMRYLSSQLALADLAQFVAHAKNK 225
Query: 357 DEIKPRYPVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASAPI 482
+ + I +GGSY G L+A+ RIKYPHLV GA+A+SAP+
Sbjct: 226 FGLTDKNKWITYGGSYPGSLSAWFRIKYPHLVIGAVASSAPV 267
>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 826
Score = 69.3 bits (162), Expect = 2e-12
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Frame = +3
Query: 180 GFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKD 359
G M + A + A EHR+YG+S P + + YL S QALAD A +
Sbjct: 137 GNMMKYAEGFGAMAFILEHRFYGQSHP--RSDMSDANLKYLNSEQALADLAAFRQAMSVK 194
Query: 360 EIKPRYPVIAFGGSYGGMLAAYIRIKYPHLV-----AGAIAASAPI 482
I+FGGSY G L+A++R+KYPHL+ GA+A+SAP+
Sbjct: 195 FNLTDSKWISFGGSYPGSLSAWLRLKYPHLIHGTTFKGAVASSAPV 240
>SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +3
Query: 180 GFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLE 281
GFMW+ A E+ A +VFAEHRYYGE+ PFG +S E
Sbjct: 1 GFMWDNAKEFGAMLVFAEHRYYGETLPFGKRSYE 34
>SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 246 GESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGS 401
G+ F N + K Y+GYL+S QALAD+A LI +++ +I+ + I+ S
Sbjct: 94 GDITWFANNTSPK-YLGYLSSEQALADFATLIRHIKVKQIQRQEVTISGNNS 144
>SB_32432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 33.5 bits (73), Expect = 0.11
Identities = 26/91 (28%), Positives = 41/91 (45%)
Frame = +3
Query: 243 YGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGSYGGMLAA 422
Y S FG KSL+ IG + + A N L + P + + GGS+GG L+A
Sbjct: 418 YKGSVGFGRKSLQS-IIGKVGTQDVREVMAAAENVLSRGAHDP-HNLFVMGGSHGGFLSA 475
Query: 423 YIRIKYPHLVAGAIAASAPIHMFPGMTKCDL 515
++ +YP A + I + +T D+
Sbjct: 476 HLIGQYPDKFRACAARNPVIDISSMVTVTDI 506
>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 2245
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/88 (29%), Positives = 36/88 (40%)
Frame = +1
Query: 118 KYYHYKDTDFRVK*KHLPITPASCGR*RLNIKPRLFSQSTDIMESPSLLVTSPWKKSTLG 297
KY +KD + + + G + L SQ T +ME SL +P+K G
Sbjct: 729 KYEPFKDPESPIVKYEWKVVDVDTGTDLTSFTNILLSQRTPLMEGLSLAPGTPYKIVLKG 788
Query: 298 TSRQPRHWLTMPTSSITFKKMKSNPATQ 381
T+ LT T S FK +S P Q
Sbjct: 789 TNAA---GLTAVTESDGFKADQSPPNCQ 813
>SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)
Length = 275
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 99 SMKIVLQILSLQRHRLSGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYGESKPFGNK 272
+M VL +L++Q + + +T + + Y V+A H Y+G KPF K
Sbjct: 201 TMNCVLVLLAVQMFDPNASSNSIFYHTIMRGKCSC-YGCHFVYALHIYHGNRKPFSGK 257
>SB_14343| Best HMM Match : PAN (HMM E-Value=3.4e-05)
Length = 158
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 395 RLVWWNVSCLYKDKV-SPPSGRSYSRLSSHTH 487
+ + W C Y + +PPSG YS+L + TH
Sbjct: 44 QFISWPYVCKYVSPMETPPSGAYYSQLYTSTH 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,785
Number of Sequences: 59808
Number of extensions: 369378
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -