Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    30   0.013
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   0.82 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 314 LG*REVPNVLFFQGLVTKRLGLSIISVLCEN 222
           +G  E PNV+F QG+VTK   + II+   EN
Sbjct: 688 MGQFEHPNVIFLQGVVTKSNPVMIITEFMEN 718


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 348 LQKDEIKPRYPVIAFGGSYGGMLAAYIRIKYPHLVAGAIAASAPIHMF 491
           LQ   + P YP+I    +    +  Y RI +P L    I    PI +F
Sbjct: 340 LQNTWLDPEYPMIRVHKTQSQTIDIYSRIGFPILFMLFIILYWPILLF 387


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 453 PLGGDTLSLYKQLTFHHTSLQ 391
           P   D+LS + Q+T HH  ++
Sbjct: 113 PYDRDSLSCWLQMTKHHNFIK 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,053
Number of Sequences: 438
Number of extensions: 3670
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)