Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E09f
(350 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 89 4e-18
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 89 4e-18
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 89 4e-18
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 89 4e-18
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 89 4e-18
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 89 4e-18
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 89 4e-18
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 89 4e-18
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 89 4e-18
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein. 29 5.5
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 28 9.5
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 28 9.5
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 28 9.5
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 28 9.5
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 28 9.5
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 28 9.5
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 28 9.5
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 196
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
Length = 1721
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 14 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTL 124
+L ++ + +H +R R G +PRK +H S+L
Sbjct: 715 ELARLQRKHDHERDESSRSPARRGPGRPRKRKHSSSL 751
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 953 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 989
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 1543 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1579
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 272 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 308
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 407 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 443
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 639 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 675
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 1520 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1556
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 133
K + S+N ++N RK + KKP+KT + +D
Sbjct: 931 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 967
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,358,685
Number of Sequences: 237096
Number of extensions: 936495
Number of successful extensions: 1809
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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