Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E09f
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 89 8e-19
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 89 1e-18
At1g04030.1 68414.m00390 expressed protein 32 0.093
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A... 32 0.12
At3g48200.1 68416.m05259 expressed protein 27 3.5
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 27 4.6
At4g37950.1 68417.m05365 expressed protein 27 4.6
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 6.1
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 26 6.1
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 6.1
At3g25950.1 68416.m03234 hypothetical protein 26 8.1
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 89.0 bits (211), Expect = 8e-19
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 181
+MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T GMDPKFLRNQR+ +K N+K
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 88.6 bits (210), Expect = 1e-18
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = +2
Query: 26 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 181
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T GMDPKFLRNQR+ +K N+K
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 32.3 bits (70), Expect = 0.093
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 23 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 139
K AKSK T Q++K + N I + R S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253
>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845
Length = 400
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 38 KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 127
KNHT H++ R ++ G K RKT +T G
Sbjct: 88 KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117
>At3g48200.1 68416.m05259 expressed protein
Length = 1088
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 20 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 184
I +A S H+ K H N I T ES G+ + + F + NLKP
Sbjct: 548 IMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 173 YPSCKTFDSLKILDPCQGWIRAWSSL 96
YP+C F SLK L+ C R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499
>At4g37950.1 68417.m05365 expressed protein
Length = 678
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 18 SSKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 176
+ WQ++ + Q T+ K+ M + + RPGT AW+ F G + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 86 YHFCELCGFGYDLYDSLTLP 27
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 86 YHFCELCGFGYDLYDSLTLPF**VFNP 6
++ C +CGF DL +LTLP + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208
>At1g62720.1 68414.m07079 pentatricopeptide (PPR)
repeat-containing protein contains multiple PPR repeats
Pfam Profile: PF01535
Length = 426
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 86 YHFCELCGFGYDLY 45
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 127 AKGGFVPGLPWLFDTISVSFAVLVMICMIL 38
A G VP WL + + FA+LV I +L
Sbjct: 205 AADGVVPRWAWLSWLVVIGFAILVSILWVL 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,097,471
Number of Sequences: 28952
Number of extensions: 123611
Number of successful extensions: 345
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -