Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   6.8  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   9.0  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.0  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 125 LSRYRRNTKLLASVSIPAVMKSIMAAFLSRMSSAG 21
           LSRY  NT+ L+S+ +P  + + + A  SR+   G
Sbjct: 197 LSRYYGNTEALSSLPLPRNLSADIPAKSSRLFPHG 231


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 139 WQRKINSELPPYAMLCSEDLAGAPSVRAAINEAFRLLPTAPFL 267
           W  K+N     YA+  +   +G PS+  A       +P  P +
Sbjct: 111 WHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLV 153


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 43  KKAAIIDFITAGIETLANSL-VFLLYLLSGRPDWQRK-INSELPPYAMLCSEDLAGAPSV 216
           KK  I  ++  G+E  +  + +F L+L+  R +W++K I   L    M C    + A S 
Sbjct: 91  KKFGIESYLVTGLEHPSTDVEIFCLHLIR-RANWEKKEIGEPLFEAIMACINSRSIAVSE 149

Query: 217 RAAI 228
            A +
Sbjct: 150 EATV 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,737
Number of Sequences: 5004
Number of extensions: 38162
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)