Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   125   3e-30
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   120   1e-28
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   3.0  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   3.9  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   3.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.8  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   6.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   6.8  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  125 bits (302), Expect = 3e-30
 Identities = 69/136 (50%), Positives = 87/136 (63%), Gaps = 1/136 (0%)
 Frame = +3

Query: 63  MVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIF 242
           +VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++ W  FY+ LTNEG+EYLR +
Sbjct: 21  LVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREY 79

Query: 243 LHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD- 419
           LHLP E+VPAT KR VR    R    GRP+   RS+   + YRR          +KK D 
Sbjct: 80  LHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---------EKKDDG 127

Query: 420 VGPGSADLEFKGGYGR 467
             PG     F+GG+GR
Sbjct: 128 AAPGGFAPSFRGGFGR 143



 Score = 30.7 bits (66), Expect = 0.14
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +2

Query: 2  MLMPKQNRVAIYEYLFKEGV 61
          ML+PK+NR AI++ LF++GV
Sbjct: 1  MLIPKENRKAIHQALFQQGV 20


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  120 bits (290), Expect = 1e-28
 Identities = 66/135 (48%), Positives = 84/135 (62%)
 Frame = +3

Query: 63  MVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIF 242
           +VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++ W  FY+ LTNEG+EYLR +
Sbjct: 21  LVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREY 79

Query: 243 LHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADV 422
           LHLP E+VPAT KR VR    R    GRP+   R++ D + YRR           K    
Sbjct: 80  LHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA--------EKKDEGA 127

Query: 423 GPGSADLEFKGGYGR 467
            P      F+GG+GR
Sbjct: 128 APSGFAPSFRGGFGR 142



 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 2  MLMPKQNRVAIYEYLFKEGV 61
          ML+PK+NR AI++ LF +GV
Sbjct: 1  MLIPKENRKAIHQALFSQGV 20


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  NKTVLLFMSTSLKREYMVAKKDYHAPKHTE 104
           NKT LL +  S +R+YMV +  +H  +  E
Sbjct: 277 NKTTLLAVHNSEERDYMVRQARHHQLQELE 306


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 361 DLSSAERAGASGRPTGPRRT 302
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 64  MYSLFKEVLINSNTVLFGH 8
           MY   KE+ +N NT+L GH
Sbjct: 446 MYIKIKELGMNKNTILIGH 464


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 177
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 327 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 440
           P+A   S+    +Y +  A+    P    +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 283 RLSVAGTISGGRCKNILKY 227
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 255 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 362
           P I P ++   V   TVR G    PD P+ S   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 484

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 93 SVHDSLFWPPCTPSLK 46
          S+HD+  WP  TPS K
Sbjct: 2  SLHDAYHWPSRTPSRK 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,786
Number of Sequences: 5004
Number of extensions: 37463
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)