Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 159 1e-39
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 1.0
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 1.8
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 5.4
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25) 27 7.1
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 159 bits (387), Expect = 1e-39
Identities = 84/157 (53%), Positives = 103/157 (65%), Gaps = 4/157 (2%)
Frame = +3
Query: 12 PNKTVLLFMSTSLKREYMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWR 191
P K ++ K VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F W+
Sbjct: 4 PKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKFCWK 63
Query: 192 HFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGPVGR--PDAPARSAE-DR 359
H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R P G P P + DR
Sbjct: 64 HYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGDRDR 123
Query: 360 SAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 470
+YRR P PGV + K G G EF+ G+GRG
Sbjct: 124 ESYRRGP-PPGV---EGKGGAGSGFKP-EFRQGFGRG 155
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 2 MLMPKQNRVAIYEYLFKEGV 61
ML+PK+NRV IYEYLFKEGV
Sbjct: 1 MLIPKKNRVIIYEYLFKEGV 20
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 372 RTPAAPGVAPHDK-KADVGPGS 434
+TPA PG+AP D K VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 381 AAPGVAPHDKKADVGP 428
A PG+APHDKK+ GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 309 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 428
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +3
Query: 246 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 392
HL P ++ + S+ RGP GRP P R + R P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 309 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 428
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
Length = 578
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 75 KDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLP 254
+DY A T I + ++ + + SRG+VK+ +A+ W + + +L +L L
Sbjct: 118 EDYDASGGTVY--ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLA 174
Query: 255 PEIVPATLKRSVR 293
P+I + R++R
Sbjct: 175 PDIASLSGIRTLR 187
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 60 YMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGI 224
Y +K D A H ++ ++ + M+ LK++ + K +F+ RH Y EG+
Sbjct: 1481 YTPSKADMKAILHDYGAELSEEKMKEYMKDLKTKKFSKLEFSLRHTYTIALVEGL 1535
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 321 GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 434
G P+ + S+E R RT AP P K PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 21 TVLLFMSTSLKREYMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSR 161
T++ + K++ + Y+A TE++K+PN V+ +K+R
Sbjct: 1018 TIIAILFIKKKKQPQRLEILYNAESQTEVDKMPNGAVVSKKPDIKNR 1064
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,448
Number of Sequences: 59808
Number of extensions: 288624
Number of successful extensions: 1022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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