Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   121   3e-28
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   120   8e-28
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   113   7e-26
At1g33430.1 68414.m04138 galactosyltransferase family protein co...    29   1.4  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.3  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  121 bits (292), Expect = 3e-28
 Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
 Frame = +3

Query: 51  KREYMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEY 230
           K   + AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGI++
Sbjct: 17  KEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDF 76

Query: 231 LRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS-----AEDRSAYRRTPAAPG 392
           LR +L+LP EIVPATLK+  +      G  G RP  P R        DR  YR  P + G
Sbjct: 77  LRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKSGG 136

Query: 393 VAPHDKKADVGPGSADLEFKGGYG 464
              +  KA   P      F+GG G
Sbjct: 137 --EYGDKAG-APADYQPGFRGGAG 157


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  120 bits (288), Expect = 8e-28
 Identities = 66/136 (48%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
 Frame = +3

Query: 69  AKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLH 248
           AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+
Sbjct: 23  AKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLN 81

Query: 249 LPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAPGVAPHDKKAD 419
           LP ++VPATLK+S +       GP G R   P RS  DR  +  R     G    D+K  
Sbjct: 82  LPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGDEKGG 141

Query: 420 VGPGSADLEFKGGYGR 467
             P      F+GG GR
Sbjct: 142 -APADFQPSFQGGGGR 156


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  113 bits (272), Expect = 7e-26
 Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
 Frame = +3

Query: 69  AKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLH 248
           AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+
Sbjct: 23  AKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLN 81

Query: 249 LPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA------EDRSAYRRTPAAPGVAPH 404
           LP ++VPATLK+S +       GP G R   P           DR  YR  P A G    
Sbjct: 82  LPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGG 141

Query: 405 DKKADVGPGSADLEFKG---GYGRG 470
           +K     P      F+G   G+GRG
Sbjct: 142 EKGG--APADYQPSFQGSGRGFGRG 164


>At1g33430.1 68414.m04138 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 395

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +3

Query: 30  LFMSTSLKREYMVAKKDY----HAPKHTELEKIPNLQVIKAMQSLKSRGYVKE 176
           LFMS +L R Y+  ++D+    H  KH E++K  +    K ++S KSR  + E
Sbjct: 24  LFMSRTLSRSYIPEEEDHHLTKHLSKHLEIQKDCDEHKRKLIES-KSRDIIGE 75


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 90  PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 179
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,489
Number of Sequences: 28952
Number of extensions: 200132
Number of successful extensions: 535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)