Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    29   0.32 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    28   0.73 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   3.0  
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    26   3.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.8  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   6.8  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 444 LHLKLVNQANAVQNTNISYETNTHIYNLKK 355
           L    + Q N V+N N+S+ +   +Y+LKK
Sbjct: 869 LSSSFIQQLNTVENLNLSFNSTDAVYHLKK 898


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/61 (18%), Positives = 30/61 (49%)
 Frame = +1

Query: 250 YNLFNSQMRCL*LLVFVFKCNTFEMRGIFLSSRIEFLQIINVCVSFVRYISILHCIGLIH 429
           ++L+  Q RCL +++    CN +++     +  +   Q+ ++     + ++ +H  G  H
Sbjct: 100 FDLYIDQFRCLHIVMEFLDCNLYQLISTRKNDPLTLEQVQDIMRQIFKGLNHIHTNGFFH 159

Query: 430 K 432
           +
Sbjct: 160 R 160


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 350  IREDKKIPLISNVLHLNTNTNSYKHLICELNKL 252
            IRE  K+P  S   HL+   NS  H+   L KL
Sbjct: 924  IRESAKVPRTSAGNHLSEKLNSDNHIPKALQKL 956


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
 Frame = +1

Query: 136 LSLGDINNQMIQKNILTLCAPIKFIIQDLSTVKG*NYKYNLFNSQMRCL*LLVFVF-KCN 312
           +++G  N  ++  N   +C P       L+++   + +     +++    ++VF F  C 
Sbjct: 50  INVGYFNMCVLSANATLICKPQFTGCPGLTSISLTDVRSKFLINEVHPW-MIVFSFCVCG 108

Query: 313 TFEMRGIFLS----SRIEFLQIINVCVSFVRYISIL 408
              + G+  S     R+EFL+ I + +SF  + SIL
Sbjct: 109 VSFLMGVVSSLPLIGRLEFLRNIRISLSFFSFFSIL 144


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 166  IQKNILTLCAPIKFIIQDLSTVK 234
            +Q+ +L  C  I F  +DLSTVK
Sbjct: 1203 VQQQLLRRCLEILFKTKDLSTVK 1225


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 491 SVFLEYNCNFSNPNYNCI 438
           +V L+   N+ NPNY C+
Sbjct: 461 NVILKIKSNWGNPNYTCL 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,274
Number of Sequences: 5004
Number of extensions: 40388
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)