Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    29   3.0  

>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -3

Query: 420 ANAVQNTNISYETNTHIY-NLKKFNTGR*ENSPH-LKCITFKYK 295
           +++V++ N   E    I+ +LKKF +G   +SP  LKCI+ KYK
Sbjct: 604 SSSVKSCNSQAEQKKTIHLHLKKFFSGTRFSSPSFLKCISSKYK 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,321,511
Number of Sequences: 37544
Number of extensions: 194577
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)