Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66) 31 0.44
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_2371| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 7.1
SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
>SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66)
Length = 378
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
MC+ + N+ +R N N C VE + + N +N +CNTN C
Sbjct: 162 MCNTSPCPGEYNNMYRVCNTNHCPVEYNNMNRVCNTNPCPGEYNNMKRVCNTNP-----C 216
Query: 281 PNNYEN 298
P Y N
Sbjct: 217 PGEYNN 222
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
+C+ N N+ R N +PC E + + N +N + +CNTN C
Sbjct: 146 VCNTNPCPGEYNNMKRMCNTSPCPGEYNNMYRVCNTNHCPVEYNNMNRVCNTNP-----C 200
Query: 281 PNNYEN 298
P Y N
Sbjct: 201 PGEYNN 206
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
+C+ N N R N NPC E + + N +N + +CNTN C
Sbjct: 130 VCNTNPCPGECNKMDRVCNTNPCPGEYNNMKRMCNTSPCPGEYNNMYRVCNTNH-----C 184
Query: 281 PNNYEN 298
P Y N
Sbjct: 185 PVEYNN 190
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
+C+ N N R N NPC E + + N +N +CNTN C
Sbjct: 290 VCNTNPCPGEYNKMDRVCNTNPCPGEYNNMDRVCNTNPCSGEYNNMKRVCNTNP-----C 344
Query: 281 PNNYEN 298
P Y N
Sbjct: 345 PGEYNN 350
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 104 CSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTN 259
C+ N N+ R+ N NPC E + + N + +N +CNTN
Sbjct: 83 CNTNTCPGEYNNMDRKCNRNPCPGEYNKMEKVCNTNPCQGEYNNMDRVCNTN 134
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
+C+ N N+ R N NPC E + + N +N +CNT S C
Sbjct: 114 VCNTNPCQGEYNNMDRVCNTNPCPGECNKMDRVCNTNPCPGEYNNMKRMCNT-----SPC 168
Query: 281 PNNYENSF 304
P Y N +
Sbjct: 169 PGEYNNMY 176
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
+C+ N N+ R N NPC E + + N +N +CNTN C
Sbjct: 306 VCNTNPCPGEYNNMDRVCNTNPCSGEYNNMKRVCNTNPCPGEYNNMKRVCNTNP-----C 360
Query: 281 PNNY 292
P Y
Sbjct: 361 PGEY 364
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTN 259
+C+ N N+ R N NPC E + + N +N +CNTN
Sbjct: 18 VCNTNPCPGEYNNMDRVCNTNPCPGEYNKMDRVCNTNSCPGEYNNMKRVCNTN 70
>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 101 MCSNNVELNSINSFFRQ*NMNPCLVESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLC 280
+C+ + N+ R N NPC VE + + N +N +CNTN C
Sbjct: 639 VCNTSPCPGEYNNMDRVCNTNPCPVEYNKMERVCNTNPCPDEYNKMERVCNTNP-----C 693
Query: 281 PNNYEN 298
P Y N
Sbjct: 694 PVEYNN 699
>SB_2371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 304 EAILIIVGTKRLLLCICITYSMKSVEKLF 218
E+ L++ G+ L +C C+TY ++ EK F
Sbjct: 12 ESRLVVEGSVALFVCYCMTYQIEQFEKFF 40
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 252 IQMQRSSLFVPTIMRIASFKKSRQYGVFCCCPHHS---LTMSKVTV 380
I+ QR FVP +F++ + +G +C C + LT S+V +
Sbjct: 1353 IEAQRPGAFVPQCKADGNFQEKQCHGSYCFCVNRDGRMLTGSRVAI 1398
>SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 82 ILCGVFAVVFLSLNIWLS 29
++CG+F V+F S+ W S
Sbjct: 134 VVCGIFRVIFFSIKYWKS 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,773
Number of Sequences: 59808
Number of extensions: 252545
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -