Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   1.2  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine re...    29   2.0  
Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    27   8.1  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    27   8.1  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    27   8.1  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    27   8.1  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 342 CPHHSLTMSKVTVIYFFYCFECLN 413
           C HH L +SK+ V+  F+C + LN
Sbjct: 6   CTHHLLPVSKLMVLCKFFCVDILN 29


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 342 CPHHSLTMSKVTVIYFFYCFECLN 413
           C HH L +SK+ V+  F+C + LN
Sbjct: 6   CTHHLLPVSKLMVLCKFFCVDILN 29


>AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 1 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 268 LLCI-CITYSMKSVEKLFKIYFIIKVYYHTTFH*TRVHILL 149
           +LC+ C  YS  +++K  K++F  K  +HT      +H+++
Sbjct: 31  ILCVPCTIYSFLAIQKATKLHFNSKCIFHTLTIFAFIHMIV 71


>Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical
           protein F20E11.10 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -2

Query: 325 YCLDFLNEAILIIVGTKRLLLCICITYSMKSVEKLFKIYFIIKVYYHTTFH*TRVHILLP 146
           YC   +  AI++I   +  ++C   T+S K   + FK  F+   Y+  TF  + +  L+P
Sbjct: 106 YCFGLMFIAIVVIFENRFRVIC---TFSWKPKWESFKSMFMPFHYFIYTFMFSIIFFLVP 162

Query: 145 EK 140
           ++
Sbjct: 163 DQ 164


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 330 VFCCCPHHSLTMSKVTVIYFFYCFECLNS 416
           V C  PH+ LT +++++I+    F CL++
Sbjct: 628 VLCSSPHNGLTPTRLSLIFAPLLFFCLDT 656


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 330 VFCCCPHHSLTMSKVTVIYFFYCFECLNS 416
           V C  PH+ LT +++++I+    F CL++
Sbjct: 826 VLCSSPHNGLTPTRLSLIFAPLLFFCLDT 854


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 330 VFCCCPHHSLTMSKVTVIYFFYCFECLNS 416
           V C  PH+ LT +++++I+    F CL++
Sbjct: 894 VLCSSPHNGLTPTRLSLIFAPLLFFCLDT 922


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 330 VFCCCPHHSLTMSKVTVIYFFYCFECLNS 416
           V C  PH+ LT +++++I+    F CL++
Sbjct: 826 VLCSSPHNGLTPTRLSLIFAPLLFFCLDT 854


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,307,420
Number of Sequences: 27780
Number of extensions: 214739
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)