Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.4  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   1.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 95  WGINYSLWSFRSSIPFFKYLVKC 27
           W +N  +W + S   FF+    C
Sbjct: 407 WSVNAGMWMWLSCSSFFQQFFHC 429


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 441 KNNLNSKMFSTLCAICIFPMLS 506
           + N+N+++F T C +  FP  S
Sbjct: 67  QGNINNQLFQTPCELLNFPKRS 88


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 414 SLNIQSNKRNISLSP*TLLKNDEDNN 337
           S  I  N + I LSP T +KN   NN
Sbjct: 15  SPQILKNDKRIYLSPRTPIKNVYKNN 40


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 219 NNFSTLFMEYVIQMQRSSLFVP 284
           NN+  L+  Y+I +++  + VP
Sbjct: 111 NNYKKLYKNYIINIEQIPVPVP 132


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 219 NNFSTLFMEYVIQMQRSSLFVP 284
           NN+  L+  Y+I +++  + VP
Sbjct: 111 NNYKKLYKNYIINIEQIPVPVP 132


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 89  INYSLWSFRSSIPFF 45
           INY+  S  +S+PFF
Sbjct: 443 INYNCRSLVASVPFF 457


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 89  INYSLWSFRSSIPFF 45
           INY+  S  +S+PFF
Sbjct: 411 INYNCRSLVASVPFF 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,604
Number of Sequences: 438
Number of extensions: 2598
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)