Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   0.97 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   3.9  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    26   3.9  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   3.9  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   3.9  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   5.2  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   5.2  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   9.0  

>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = -3

Query: 144 IYRYCVLI--FYRSKFTHNLPTL-FFMTKLNDNLLFLGCHYLS*IP 16
           I+  CV+   +Y   F+H+L  + FF+T +   + F+G HYL+ IP
Sbjct: 41  IFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGFHYLNSIP 86


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 402 VVPFTKFWSVTCYEHFLLDGIYIRNG 325
           + P+T+FW     E  ++ G Y +NG
Sbjct: 585 IKPYTEFWDNERVEREIIAGDYFKNG 610


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 287 FCSGSGSDIFLSGLVFCIFLSSRKNQR 207
           F    GS+IF++ L    +L ++KNQR
Sbjct: 135 FLFAKGSEIFIAELTMRAWLHAKKNQR 161


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 120 FYRSKFTHNLPTLFFMTKLNDNLLF---LGCHYL 28
           FYR++   N  +LFF + L+  LLF   L CH +
Sbjct: 332 FYRNRNYQNARSLFFASLLHLPLLFTLTLACHMI 365


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 229 RKIQKTKPERKMS-EPEPEQKAELISQQWQFSVTVPDINPIKEKVFVTGNTPELGEWDYT 405
           +K +KT  E  M   PE EQ  E+      +     D NP   +VF        GE    
Sbjct: 248 KKSKKTSGEEVMFFHPEDEQFREVAIDIADYPFANQDFNPDANRVFQDAGIKPQGE---- 303

Query: 406 KIIMMDYDEASNLWLKTLTI 465
            +++M  ++  NL  K + I
Sbjct: 304 -LLLMTNEDFKNLVPKLMEI 322


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 220 LEERKIQKTKPERKMSEPEPEQKAELISQQWQ 315
           L + + QKT+ ER  S+ E    A+L+   W+
Sbjct: 206 LRQYQEQKTEAERYQSQKEKRDSAQLVYLLWK 237


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 350 LMGFISGTVTENCHCWEISSAFCSGSGSDIF-LSGLVFCIFLS 225
           L+GF+ G +      W +   F +G   D + L  L F I+LS
Sbjct: 441 LIGFVIGIILTLVQGWTVFKPFAAGDFVDAYILLPLFFVIWLS 483


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 238 QKTKPERKMSEPEPEQKAELISQQWQFSVTVPDINPIKEKVFVTGNTPELG 390
           +K K   K SE   +        ++  S+    +N  KE  FVT N  ELG
Sbjct: 193 EKKKKPLKSSEEISKDMGSYNLPRFLASLIDASLNDTKEIEFVTSNKEELG 243


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 368 VTNTFSLMGFISGTVTENCHCWEISSAFCSGSGS 267
           + N+F+ MG  S T T N H  E   A    S S
Sbjct: 293 IVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,993
Number of Sequences: 5004
Number of extensions: 44300
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)