Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2)                 36   0.027
SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2)                     35   0.035
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   29   3.1  
SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59)                 28   4.1  
SB_36934| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                27   7.1  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)            27   9.4  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2)
          Length = 492

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 238 QKTKPERKMSEPEPEQKAELISQQWQFSVTVPDINPIKEKVFVTGNTP-ELGEWDYTKII 414
           ++ + +R  SE   E++ E  + +W +SVT  +++P  E +  T   P E G  D+ K++
Sbjct: 233 RQARVKRATSEESDEEREEA-NAEWTYSVTEINVSPFTEDIGPTAQLPAEAGALDFFKLL 291

Query: 415 MMD 423
             D
Sbjct: 292 FTD 294


>SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2)
          Length = 725

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 235 IQKTKPERKMSEPEPEQKAELISQQWQFSVTVPDINPIKEKVFVTGNTP-ELGEWDYTKI 411
           + + + E   SE   E++ E  + +W +SVT  +++P  E +  T   P E G  D+ K+
Sbjct: 44  VDEDEEEASESEESDEEREEA-NAEWTYSVTEINVSPFTEDIGPTAQLPAEAGALDFFKL 102

Query: 412 IMMD 423
           +  D
Sbjct: 103 LFTD 106


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 93  LPTLFFMTKLNDNLLFLGCHY 31
           LPTL+F+T + +N+LF  C++
Sbjct: 287 LPTLYFITSVEENVLFSECNH 307


>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +1

Query: 175 IANNGKINIMQRWFFLEERKI----QKTKPERKMSEPEPEQKAELISQQWQFSVTVPD 336
           +  N   NIM++W    ERK+    Q+ + E+K  + E ++ A L++++    V   D
Sbjct: 43  VIRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKD 100


>SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59)
          Length = 487

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 438 GSLVIIHHNYFCVVPFTKFWSVTCYEHFLLDGIYIRNG 325
           G    I HN  C +    FWS T     ++ G+YI  G
Sbjct: 132 GQRSYITHNALCFLNNQSFWSSTTSNLKIIRGVYISEG 169


>SB_36934| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 328

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 424 YDEASNLWLKTLTIPNTCEVLYRY 495
           YD  SN W+++ + P T  + YR+
Sbjct: 290 YDNLSNRWIRSASQPTTLHLAYRH 313


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 380 GVLPVTN-TFSLMGFISGTVTENCHCWEISSAFCSGSGSDIFLSG 249
           GVLP  N T+ ++   + ++  NCH   I++    G G D  L G
Sbjct: 693 GVLPELNKTYDIIKLTTSSIV-NCHQQAIAAVGLPGLGEDTLLDG 736


>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
          Length = 365

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 190 KINIMQRWFFLEERKIQKTKPERKMSEPEPEQKAE 294
           K+++ ++    E     + +PE K  EPEPE +AE
Sbjct: 81  KVSVKEKVIKKEPEPEPEPEPEVKAEEPEPEVEAE 115


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 220 LEERKIQKTKPERKMSEPEPEQKAELISQQWQ 315
           LE+      +P+ ++ EP+PEQ+   + QQ Q
Sbjct: 738 LEKMGFPMEEPKSEVPEPDPEQQEAYLQQQQQ 769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,066
Number of Sequences: 59808
Number of extensions: 298151
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)