Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0035 - 20375009-20375080,20375290-20375379,20376582-203766...    87   6e-18
08_01_0168 - 1385439-1385979,1386081-1387438                           27   6.9  
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004           27   9.1  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    27   9.1  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    27   9.1  

>09_06_0035 -
           20375009-20375080,20375290-20375379,20376582-20376684,
           20376784-20376864,20376966-20377192
          Length = 190

 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 41/110 (37%), Positives = 66/110 (60%)
 Frame = +1

Query: 187 VRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHDIHVPTEVFDYIDQGRNPQ 366
           + Q+ + VS F    Q  L Q++ SLV  L  + K  ++  +I VP EV + ID G+NP 
Sbjct: 54  LHQLNLNVSSFSSASQLPLLQRLNSLVAELDTMQK-HAEGCNIQVPMEVVNLIDDGKNPD 112

Query: 367 LYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNEITKYKALR 516
            +T+D ++  +AKN+  KGK D++K  + HLL EL + FP ++  Y+ +R
Sbjct: 113 EFTRDVLNSCIAKNQVTKGKTDAFKSLRKHLLEELEQAFPEDVEAYREIR 162


>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 188 TFSMNISS*VSRFSKGDDMLFFIEIYTS 105
           TFS NI +   R ++GD M FF+  Y S
Sbjct: 97  TFSFNIVTPSDRNNRGDGMAFFLGSYPS 124


>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
          Length = 681

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 185 FSMNISS*VSRFSKGDDMLFFIEIYTS 105
           FS NI +   R  KGD M FF+  Y S
Sbjct: 96  FSFNIIAPSDRSKKGDGMAFFLTSYPS 122


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 185 FSMNISS*VSRFSKGDDMLFFIEIYTS 105
           FS NI +   R  KGD M FF+  Y S
Sbjct: 99  FSFNIIAPSDRSKKGDGMAFFLTSYPS 125


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
 Frame = +1

Query: 127 NSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQV 306
           NS+S   E+L  Q + F E   Q+    +  + + + + N+K         E  +LK + 
Sbjct: 492 NSLSEETEDLRKQRQKFEEEWEQLDEKRTHLEEEAKKLNNEKKNLERWHDNEEKRLKDRE 551

Query: 307 HDIHVPTEVFDYIDQGRNPQLYTK---DCIDKALAKNEEV--KGKIDSYKRFKTH 456
            ++ +      Y +QG N  L  K   D ID    +NEE+  + + D  +  + H
Sbjct: 552 DELDI-----KYKEQGENLALKEKSLIDNIDHQRLENEELLKRERADLQRNLQLH 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,974,923
Number of Sequences: 37544
Number of extensions: 194456
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)