Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 30 1.0
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 29 2.3
SB_55594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 5.4
SB_42735| Best HMM Match : 7tm_1 (HMM E-Value=0.059) 27 7.1
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 27 9.4
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = +1
Query: 136 SSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVL--NQKIQSLVTGLQEIDKLKSQVH 309
+S L++++ + E+ I N++ I + Q G+ L N+ +Q +V+ +QE+++LKS+
Sbjct: 1095 ASSLDDIKVKYELLIANLKDD--IETQKQNNGELELANNRHMQEIVSLVQEVERLKSETG 1152
Query: 310 DIHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKID 432
+ + D Q Y KD I++ +N+ K I+
Sbjct: 1153 NTSTESVTED-------TQTY-KDHIEELQKENDRYKSLIE 1185
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 124 KNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQ 303
K M + ++ L+ + F V ++R Q Q +L + +L G + L+S+
Sbjct: 152 KKKMDTKMQLLQREKLKFSSEVEEVR------QESSQKILELQ-NTLAKGETQQLNLQSK 204
Query: 304 VHDIHVPTEVFDY-IDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKT 480
+ + E+F Q N ++ +KA VK +++ ++ S ++ +
Sbjct: 205 LEEAEDMLEIFKRRYSQAVNNATELEEAKNKARTAEHRVK-ELEHQLSLQSEA-SSITVS 262
Query: 481 FPNEITKYKAL 513
F N++TKY+AL
Sbjct: 263 FQNQLTKYRAL 273
>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +1
Query: 253 IQSLVTGLQEIDKLKSQVHDIHVPTEVFDYIDQGR----NPQLYTKDCIDKALAKNEEVK 420
++ ++ L ++++L ++H + D+ D GR N + Y+K I L+ E +K
Sbjct: 455 VKEILKTLPDLERLLRKIHSLGSVRRATDHPD-GRAILYNEETYSKRKIADFLSVLEGLK 513
Query: 421 GKIDSYKRFKTHLLSELSKTFPNEITK 501
+ K FK H+ SK IT+
Sbjct: 514 STVRIVKLFKDHVSEFKSKLLKQIITQ 540
>SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +1
Query: 286 DKLKSQVHDIHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLS 465
++L S H I V T + P +T + + +E++ IDS+ +
Sbjct: 139 NRLDSSSHTIGVMTRGGAFSSSSSTPLTFTHGPVKSLTTQIQELQASIDSHNVALYEIRQ 198
Query: 466 ELSKTFPN 489
ELSKT N
Sbjct: 199 ELSKTNQN 206
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 29.1 bits (62), Expect = 2.3
Identities = 29/109 (26%), Positives = 49/109 (44%)
Frame = +1
Query: 181 ENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHDIHVPTEVFDYIDQGRN 360
E + + R I+ Q + + +++ K QS + IDK +S+ DI + +Y D
Sbjct: 187 EALSKCRDIIDKAQSKYRDIID-KAQSKYRDI--IDKAQSKYRDI-IDKAQSNYRDIIDK 242
Query: 361 PQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNEITKYK 507
Q +D IDKA +K ++ K S R S+ E +KY+
Sbjct: 243 AQSNYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQSKYRDIIDKEQSKYR 291
>SB_55594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 398 WLKMKR*KEKLIHTSDSKLIYFLSYQRPSLMRLQS 502
WLK+K E+L T D KL + +S Q +L L++
Sbjct: 6 WLKLKSSTEQLQQTFDGKLHWAVSMQSLALQNLRN 40
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 238 VLNQKIQSLVTGLQEID-KLKSQVHDIHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEE 414
+L +++S +QE+ K++ Q + E+ D + + K+ +++A ++NE
Sbjct: 483 ILGDELKSEEKQIQELQSKIRQQQEQLEQQREITDTVSTDLEEK--AKE-LEEAKSENEA 539
Query: 415 VKGKIDSYKRFKTHLLSELSKT 480
+ GK+ + T + EL+ T
Sbjct: 540 ISGKMKDMESQLTSIADELAST 561
>SB_42735| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
Length = 323
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = -2
Query: 358 YGLDQYNQRLLLVHGYHELVTSICQSPAIQSLRTEF 251
+G +N+R+ L++G+ ++S+ + A++ + T+F
Sbjct: 153 FGEPTFNRRVYLMYGFLVYISSMLSNKAVRRIATQF 188
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 379 DCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNEITKYK 507
+ + A KN+ ++ +ID+ K+ K ++ L + +E+ KYK
Sbjct: 647 EALQAAETKNKAMEKEIDALKQNKDKDVTALKEELTSEVQKYK 689
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.1 bits (57), Expect = 9.4
Identities = 26/85 (30%), Positives = 39/85 (45%)
Frame = +1
Query: 232 QSVLNQKIQSLVTGLQEIDKLKSQVHDIHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNE 411
Q+ L KI+ + I K+ DIH P + + R+ + TK+ KA K
Sbjct: 399 QAGLYMKIEPVKGENGHITVRKNAFCDIHSPNSSEENEGEERSEEEKTKEVKSKAAVKTG 458
Query: 412 EVKGKIDSYKRFKTHLLSELSKTFP 486
+ + S K+F+ LLSE KT P
Sbjct: 459 KTNKR--SIKKFR-KLLSE-KKTMP 479
>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 127 NSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKL-KSQ 303
N+ PL++ T+LE+ I+ + + P ++LN+ + S V G DKL K
Sbjct: 251 NNRQGPLDHEFTELEI----TNAIKSLKTGKAPGADNILNEVLNSEVWGTDCNDKLEKDP 306
Query: 304 VHDIH 318
+ +H
Sbjct: 307 IESVH 311
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 376 LCRAVGY-GLDQYNQRLLLVHGYHELVTSICQSPAIQSLRTEFFDSVHFAP 227
LCR G +Y + HGYHEL + + P ++ F ++ F P
Sbjct: 159 LCRPFEESGTCKYGDKCQFAHGYHEL-RQLARHPKYKTELCRTFHTIGFCP 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,869
Number of Sequences: 59808
Number of extensions: 251573
Number of successful extensions: 670
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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