Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.7  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +1

Query: 283 IDKLKSQVHDIHVPTEVFDYIDQGRNPQL--YTKDCIDKALAKNEEVKGK----IDSYKR 444
           I++LK Q+HD+    +    IDQ     +     D  D+   +  E   K    +D    
Sbjct: 19  IEELKIQLHDVQEICKTESGIDQQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGN 78

Query: 445 FKTHLLSELSKTFPNE 492
           FK +++ EL+  + +E
Sbjct: 79  FKENIVQELTSIYLDE 94


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 214 DFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVH 309
           DF+ +     N+    L+T + E+D++ +  H
Sbjct: 524 DFKIEVTEDCNKSFNDLLTQVAELDQIYADTH 555


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,195
Number of Sequences: 438
Number of extensions: 2179
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)