Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...   109   2e-25
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    30   0.18 
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.0  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   9.0  

>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  109 bits (263), Expect = 2e-25
 Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
 Frame = +1

Query: 193 MPAYHST---LTDYSQTVGNLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRF 363
           MPAYHS+   LTD   T GN+A+LPL+T FRGPA  + + ++DIIDE +  F+AN FFR 
Sbjct: 1   MPAYHSSFLSLTDVP-TTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59

Query: 364 YEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPG 513
           +EIK  ADR LIY TL++SECL R+   + ++  ++++  LA+  F IPG
Sbjct: 60  FEIKGPADRTLIYGTLFISECLGRVNGLNYRD-AERQLNSLALENFSIPG 108


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 431 KDCRSVPAKIKVNKRCTCWLYPSLTF 508
           K CR++  ++K N +C C L P L F
Sbjct: 43  KKCRAIKQQLKSNLKCVCHLQPFLPF 68


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 160 KRRLQRSSSDKMPAYHSTLTDYSQTVGNLAILPLRTSFRG 279
           +RR+    S ++ A  ST   YS+  G++ + PL ++  G
Sbjct: 160 RRRIWELHSPELRASFSTPPSYSKYQGDVKVSPLPSTLTG 199


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 289 TSSDIELDIIDEALNYFKANVFFRFYEIKSDADRVLIYLTLYVSECLKRLQK 444
           T  D++LD +DE L ++  +      +   D D  LIY    + E  K ++K
Sbjct: 103 TLKDLKLDYLDEYLIHWPVSFKTGEDKFPKDKDGNLIYEKNPIEETWKAMEK 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,477
Number of Sequences: 5004
Number of extensions: 28185
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)