Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...    88   5e-18
10_08_0002 - 13986969-13989338                                         30   1.3  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   6.9  

>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 15/121 (12%)
 Frame = +1

Query: 202 YHSTLTDYSQTVG--NLAILPLRTSFRGPAPT-------SSDI------ELDIIDEALNY 336
           YHS+  D +         +LPL+T  RGPAP        ++D+      + DI+DEA+ +
Sbjct: 3   YHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQEPCQAADLCRAITDKADIVDEAITF 62

Query: 337 FKANVFFRFYEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGE 516
           F+ANVFF+ + +KS AD++LIYLT Y++  LKRL+ C +   G + +  L + K  +PGE
Sbjct: 63  FRANVFFKNFNVKSPADKLLIYLTFYINIALKRLEGCRTLAVGTKAIINLGLEKVPVPGE 122

Query: 517 P 519
           P
Sbjct: 123 P 123


>10_08_0002 - 13986969-13989338
          Length = 789

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +1

Query: 148 GLF*KRRLQRSSSDKMPAYHSTLTDYS-QTVGNLAILPLRTSFRGPAPTSSDIELDIIDE 324
           G+F K   ++    K   YH  ++ +  + +G +   P    F    P +  I    ID+
Sbjct: 424 GIFTKDSYEQMIIKKENEYHMNVSAFQLEPIGVVPDFPYVAPFSSSVPDACLIVRSFIDD 483

Query: 325 ALNYFKANVFFRFYE-IKSDADRVLI 399
           ++NY   +     Y+ +K   D++LI
Sbjct: 484 SVNYLSYDPMMDAYDVVKRYLDKLLI 509


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 178 SSSDKMPAYHSTLTDYSQTVGNLAILPLRTSFRGPAPTSSD 300
           SSSD  P   + L+D S  +  + + P   +   PAPT SD
Sbjct: 255 SSSDAAPVPATLLSDASPVIVQVPVPPSSDAAPVPAPTLSD 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,456,117
Number of Sequences: 37544
Number of extensions: 159286
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)