Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47145| Best HMM Match : P21-Arc (HMM E-Value=2.29999e-40)           62   2e-10
SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)                 34   0.062
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         29   1.8  
SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)                    28   5.4  
SB_12093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_47145| Best HMM Match : P21-Arc (HMM E-Value=2.29999e-40)
          Length = 138

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +1

Query: 244 LAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRFYEIK 375
           +A+LPL +SF+GPAP S D   DI+DE L YFKANVFF+ YEIK
Sbjct: 1   MALLPLNSSFKGPAP-SGDGSADIVDETLYYFKANVFFKSYEIK 43


>SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)
          Length = 462

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +3

Query: 390 SFNLPNIICIGMSQKTAEVFQQKSRSTRDVHVGYIQV*HSW 512
           +F++PNII I ++ KT E  +++ +   D + G++   H+W
Sbjct: 340 TFHIPNIIMITIAIKTMEFLKKRRKKVMDGNPGFLDKAHAW 380


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 229 QTVGNLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRF 363
           QT     I+P+ + FR P   S +I + + D+A   FK+    RF
Sbjct: 639 QTQAQEVIIPIVSQFRSPGRRSLEIRITLDDQA-TIFKSGFLLRF 682


>SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 241 NLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKAN 348
           +L + PL   F+    + S+IE+D+ID  L  F  N
Sbjct: 124 HLMMSPLSKMFKTKGSSMSNIEIDLIDPDLQRFMTN 159


>SB_12093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 163 RRLQRSSSDKMPAYHSTLTDYSQTVGNLAIL 255
           R LQR  SD MP   S L D+S+ +  L++L
Sbjct: 85  RALQRCRSDTMPLELSALRDWSERLRYLSML 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,693
Number of Sequences: 59808
Number of extensions: 189100
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)