Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60430.1 68414.m06803 ARP2/3 complex 21 kDa subunit family co...    95   3e-20
At2g43260.1 68415.m05377 F-box family protein / S locus-related ...    27   5.8  

>At1g60430.1 68414.m06803 ARP2/3 complex 21 kDa subunit family
           contains Pfam PF04062: P21-ARC (ARP2/3 complex 21 kDa
           subunit); similar to Arp2/3 complex subunit p21-Arc
           (GI:6983853) [Mus musculus]; similar to ARP2/3 complex
           21 kDa subunit (P21-ARC) (Actin-related protein 2/3
           complex subunit 3) (Swiss-Prot:O15145) [Homo sapiens];
           similar to Chain E, Crystal Structure Of Arp23 COMPLEX
           Length(GI:17943203) [
          Length = 174

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
 Frame = +1

Query: 202 YHSTLTDYSQTVG--NLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRFYEIK 375
           YHS+  D           +LPL++  +GPAP S   + DI+DEA+ +F+ANVFF  ++IK
Sbjct: 3   YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFDIK 62

Query: 376 SDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGE 516
           S AD++LIYLT Y++  LKRL+ C +   G + +  L +    +PGE
Sbjct: 63  SPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGE 109


>At2g43260.1 68415.m05377 F-box family protein / S locus-related
           weak similarity to S locus F-box (SLF)-S2 protein
           [Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 420

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 226 SQTVGNLAILPLRTSFRGPAPTSSDIELDI 315
           S  V NL  LPL+ S   P P +SD E+ I
Sbjct: 350 SPYVENLVPLPLKPSHPHPTPKNSDFEMRI 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,003
Number of Sequences: 28952
Number of extensions: 136326
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)