Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D10f
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 87 6e-18
Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical pr... 31 0.59
U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 27 9.5
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 27 9.5
Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 27 9.5
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 87.0 bits (206), Expect = 6e-18
Identities = 44/93 (47%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +3
Query: 9 CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK---G 179
C YSGYKI+PGHGK +V+ DGK FL+ K +RRNPR + WTVLYR K KK G
Sbjct: 6 CVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHG 65
Query: 180 QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRN 278
QE+ + G SL I+AKRN
Sbjct: 66 QEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98
>Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical
protein C03D6.8 protein.
Length = 162
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 9 CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 164
C + IYPGHG V+ D F F S+C ++NPRK+ +T RR
Sbjct: 6 CYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57
>Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical
protein C47A4.2c protein.
Length = 383
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -2
Query: 334 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 155
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 184
Query: 154 RTVHVTLRGFLLIKWAASHFEFR 86
+V+ L S F++R
Sbjct: 185 YKYYVSKGNRLRAAQEQSSFDYR 207
>Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical
protein C47A4.2b protein.
Length = 451
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -2
Query: 334 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 155
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 252
Query: 154 RTVHVTLRGFLLIKWAASHFEFR 86
+V+ L S F++R
Sbjct: 253 YKYYVSKGNRLRAAQEQSSFDYR 275
>Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical
protein C47A4.2a protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -2
Query: 334 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 155
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 246
Query: 154 RTVHVTLRGFLLIKWAASHFEFR 86
+V+ L S F++R
Sbjct: 247 YKYYVSKGNRLRAAQEQSSFDYR 269
>U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical
protein C18H9.5 protein.
Length = 464
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 322 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 173
+MA + S FIL + I + + A W+ + L V FF ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 152 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 238
PVQ QV++ + + SK+T + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 152 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 238
PVQ QV++ + + SK+T + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488
>Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical
protein F49E2.5f protein.
Length = 611
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 152 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 238
PVQ QV++ + + SK+T + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,959,266
Number of Sequences: 27780
Number of extensions: 159144
Number of successful extensions: 305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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