Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   216   1e-57
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   216   2e-57
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   3.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.2  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    25   6.8  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   9.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  216 bits (528), Expect = 1e-57
 Identities = 109/172 (63%), Positives = 127/172 (73%), Gaps = 1/172 (0%)
 Frame = +1

Query: 7   GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 186
           GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L
Sbjct: 47  GYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDL 106

Query: 187 SVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAK 363
           +VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P K
Sbjct: 107 AVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKK 166

Query: 364 EGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
           EGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 167 EGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  216 bits (527), Expect = 2e-57
 Identities = 108/172 (62%), Positives = 127/172 (73%), Gaps = 1/172 (0%)
 Frame = +1

Query: 7   GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 186
           GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L
Sbjct: 47  GYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDL 106

Query: 187 SVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAK 363
           +VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P K
Sbjct: 107 AVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKK 166

Query: 364 EGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
           EGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 167 EGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 308 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 403
           LAK ++     +N  +QLR +KK L  D++ L
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 324 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 190
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 269 VPNVLPKSVSCSTLAKKMMYVVMSSNACSQLRKEKKTLNPDIRHLRSRG*SP 424
           VP V    VS + +   ++  + + +AC Q +KE + L+    +L S   SP
Sbjct: 25  VPTVAEGGVSVAYVMPNLIPPITTVDACLQYKKEIEQLDSKTTYLMSLYLSP 76


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 91  LLMSKGHSCYRPRRDGERKRKSVRGCIVD 177
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,763
Number of Sequences: 5004
Number of extensions: 39643
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)