Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 194 3e-50
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 194 4e-50
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 1.7
02_01_0295 - 1973115-1973404,1974138-1974663 29 1.7
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 27 9.1
06_01_0288 - 2106113-2109055 27 9.1
04_01_0377 - 4970034-4970687 27 9.1
03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878... 27 9.1
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 194 bits (474), Expect = 3e-50
Identities = 104/177 (58%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Frame = +1
Query: 1 WKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIV 174
+KGYV ++ GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV
Sbjct: 45 FKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIV 104
Query: 175 DANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKR 348
+LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R
Sbjct: 105 SQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR 164
Query: 349 VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
K GK+ + KAPKIQRLVTP+ LQ S AEY KLL
Sbjct: 165 TFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLL 217
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 194 bits (473), Expect = 4e-50
Identities = 103/177 (58%), Positives = 123/177 (69%), Gaps = 4/177 (2%)
Frame = +1
Query: 1 WKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIV 174
+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV
Sbjct: 45 FKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIV 104
Query: 175 DANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKR 348
+LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R
Sbjct: 105 SQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRR 164
Query: 349 VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
K GK+ + KAPKIQRLVTP+ LQ S AEY KLL
Sbjct: 165 TFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLL 217
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 262 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 420
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 106 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 279
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 280 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 369
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 510 SIFSLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCL 394
S+ SL+G A+ LLQS + +T QN+ + LRCL
Sbjct: 515 SLQSLQGKAIEPLELLQSLLLPATKQNHDDVQRVALRCL 553
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/96 (21%), Positives = 43/96 (44%)
Frame = -3
Query: 501 SLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCLMSGFSVFFSFLSWEHAFDDITTYI 322
SL L + L L S ++ + + G+ L C+ G++V + + D TY+
Sbjct: 684 SLPQLHALQNLDLASNKLSGPVPQFLGN--LTSMCVDHGYAVMIPSAKFATVYTDGRTYL 741
Query: 321 IFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 214
++L + ST+ +I +S+++ F G +
Sbjct: 742 AIHVYTDKLESYSSTYDY-PLNFIDLSRNQ-FTGEI 775
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 156 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 290
S W YC GLGS +C GC + +C + C N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162
>03_02_0480 +
8785130-8785192,8785472-8785518,8786415-8786508,
8786598-8786699,8786988-8787259,8787343-8787420,
8787648-8787894
Length = 300
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -2
Query: 190 PRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCL 74
PR W+ Y HRGA + E +HG +
Sbjct: 204 PRKWKTNKGQVFFYCLKRHRGASKKQGASMVEEVDHGTM 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,172
Number of Sequences: 37544
Number of extensions: 293454
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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