Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 254 4e-68
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 31 0.44
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74) 29 2.3
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 3.1
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 4.1
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 5.4
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 5.4
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 28 5.4
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 5.4
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 5.4
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 27 7.1
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 27 7.1
SB_54765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 27 9.4
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 27 9.4
SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 254 bits (621), Expect = 4e-68
Identities = 121/173 (69%), Positives = 136/173 (78%)
Frame = +1
Query: 1 WKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDA 180
WKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+
Sbjct: 12 WKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDS 71
Query: 181 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPA 360
LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP
Sbjct: 72 QLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPE 131
Query: 361 KEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
KEGK K + KAPKIQRLVTPVVLQ A+YAKLL
Sbjct: 132 KEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLL 181
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 111 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALP 1
V L Q+ + A+ D L H +SL V+ SD + ++LP
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLP 288
>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
Length = 172
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 157 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 297
VR C +D +VLA + + A E GLT+G V GP R +++
Sbjct: 86 VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 247 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 345
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 468 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSV 376
L+QSE+ T T NY P++L C GF V
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 295 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 414
+ F+++KEDD+ Y++ L + K NA ++ P+ R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +1
Query: 214 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 372
+GA+++P L +G V P + G K R++ +++L E DVR + RV ++
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326
Query: 373 ENAKPRHKAP 402
A P+ P
Sbjct: 327 PPATPQEADP 336
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 280 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 390
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 27.5 bits (58), Expect = 7.1
Identities = 26/86 (30%), Positives = 40/86 (46%)
Frame = +1
Query: 139 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKE 318
+ K KSV+ VD + S L R AQE L DG ++L A K +L KE
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMK-----SLVKE 243
Query: 319 DDVRRYVVKRVLPAKEGKENAKPRHK 396
++ + V +R +E ++ K + K
Sbjct: 244 LELEKLVEQRSELVQEKQKKKKEKEK 269
>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 121 CNMSGPLTSEDEHGCLSGRPVSSGILACR 35
C S L +E GC S RP+ SG +CR
Sbjct: 105 CTSSAVLPAEKGGGCTSARPIRSG--SCR 131
>SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 214
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + I+++A
Sbjct: 26 LAKGKSLFFAFVDLEKAFDRVPHVILWWA 54
>SB_54765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 287 KSVSCSTLAKKM-MYVVMSSNACSQLRKEKKTLN 385
K V+ LA+ + Y+ +++N C QLR +KTL+
Sbjct: 238 KQVAVGNLAESLNKYLNLNNNRCQQLRLGEKTLD 271
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 280 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP 387
A ++ + + DDV+ ++K ++P KEG E+ P
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 280 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP 387
A ++ + + DDV+ ++K ++P KEG E+ P
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + I+++A
Sbjct: 233 LAKGKSLFFAFVDLEKAFDRVPRDILWWA 261
>SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 396 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 310
L G S+FF+F+ E AFD + I+++A
Sbjct: 121 LAKGKSLFFAFVDLEKAFDRVPRDILWWA 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,705
Number of Sequences: 59808
Number of extensions: 330565
Number of successful extensions: 1046
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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