Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   204   4e-53
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   4.7  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    27   8.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  204 bits (497), Expect = 4e-53
 Identities = 102/173 (58%), Positives = 120/173 (69%)
 Frame = +1

Query: 1   WKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDA 180
           WKGYV+R+ GGNDKQGFPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDA
Sbjct: 45  WKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDA 104

Query: 181 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPA 360
           N+S L+LVIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+      
Sbjct: 105 NMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTF 164

Query: 361 KEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
            +G      +  APKIQRL+TP  +                     A Y KLL
Sbjct: 165 PDG----VTKTIAPKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLL 213


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 393 MSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF-LGT 217
           +S F+  F +++W  AF D       F  V  +  F        + YIS+S    + +  
Sbjct: 33  VSSFNKSFGYITWNQAFGDALQSTTVFTLVVPMVFFDLEVLKANSNYISLSMLLGYDISV 92

Query: 216 LAH 208
           L+H
Sbjct: 93  LSH 95


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 223 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 396
           Q  P + D N   R  PK   K  K+ +LS  E+D +  V     P+KE KE  K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 193  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 342
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +2

Query: 80  AVFVF*CQRATHVTDRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*L 244
           A+  F C+   HVT  +      +E  +V++ + V+   I  S+  ++ + +   F    
Sbjct: 58  AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114

Query: 245 MEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSN 346
              Y +V  P +L K  SC  + K  +Y++  S+
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYILTFSS 147


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 411 LDLRCLMSGFSVFFSFLSWEHAFDDITTYIIFFAKVE 301
           L LRC+ + ++  F  +  +H   D+   ++FF  V+
Sbjct: 34  LRLRCVSNTYNTTFYSILLQHCIADLLAMLVFFVAVD 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,072
Number of Sequences: 27780
Number of extensions: 235087
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)