Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             191   3e-49
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   190   5e-49
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   0.82 
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   4.4  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    27   7.7  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    27   7.7  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  191 bits (465), Expect = 3e-49
 Identities = 103/177 (58%), Positives = 121/177 (68%), Gaps = 4/177 (2%)
 Frame = +1

Query: 1   WKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIV 174
           +KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIV 104

Query: 175 DANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKR 348
             +LSVL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R
Sbjct: 105 SPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRR 164

Query: 349 VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
               K+GK+ +    KAPKIQRLVTP+ LQ                 S  A+Y KLL
Sbjct: 165 TFTNKKGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLL 217


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  190 bits (463), Expect = 5e-49
 Identities = 104/177 (58%), Positives = 120/177 (67%), Gaps = 4/177 (2%)
 Frame = +1

Query: 1   WKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIV 174
           +KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV
Sbjct: 45  FKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIV 104

Query: 175 DANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKR 348
             +LSVL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R
Sbjct: 105 SPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRR 164

Query: 349 VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 519
               K+GKE +    KAPKIQRLVTP+ LQ                 S  A+Y KLL
Sbjct: 165 KFTNKKGKEVS----KAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLL 217


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 238 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 384
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 226 EIPGLTDGNVPRRLGPKRASKIRKL 300
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +1

Query: 136 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKRASKIRKLFNL 309
           G ++    RG +   + S  AL  +  GA   PG       +P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 310 SKEDDVRRYVVKRVLPAKEG 369
             + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 274 KRASKIRKLFN--LSKEDDVRRYVVKRVLPA-KEGKENAK 384
           KR + I KL +  L + +D+R Y+V  +LP    G  NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,570
Number of Sequences: 28952
Number of extensions: 223014
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)