Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 29 0.32
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.3
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 27 1.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 2.2
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 5.2
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 6.8
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 6.8
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 9.0
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 9.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.0
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 25 9.0
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 378 NYGNMPSVLDLCTNKYSQVHIILTGVCYMSARNSAGRL-DLY-YEVARA 518
+Y N PSVLD + +Y+Q+ I + A N RL +LY +E+ RA
Sbjct: 82 SYLNEPSVLDALSTRYNQLQIYTYSGIVLIAVNPFQRLPNLYTHEIVRA 130
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 TTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNM-PSVLDLCTNKYSQ 431
TT+TT+ PE +++ + VS+ S+ T YP + +M S L + S
Sbjct: 572 TTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSS 631
Query: 432 VHIILTGVCYMSARNSAGRLDLYYEVARAC 521
H + MS SAG ++ C
Sbjct: 632 AHSSSSRSSSMSLPPSAGSSTSLQRISLLC 661
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 376 FG-YASVKTYIVDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEH 245
FG YA ++ I + T PA FSGQS LV VKE+
Sbjct: 44 FGVYAIIQARINANNDETPLVYEEPAPPFSGQSNGKLVTTTVKEY 88
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 78 DTTESMDDEINIIKANIGEVVRNLNNKSTVSAYIL 182
DTT++ D E+ + I E+V N S V A L
Sbjct: 20 DTTDNFDAEMQDLNGYISEIVDEARNVSEVDAKFL 54
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 303 AGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQV 434
A + L+V +S+ +VFT+A G ++LD T K++ V
Sbjct: 64 AALYRVLQVLKLDSSYFVFTNAPKLLQGTFAAILDYGTYKFALV 107
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 6 YFNILLLFIIMIAEITCKSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTVSAY 176
++N L +F+ + I + V+D T + + + VR+L N S VSA+
Sbjct: 1460 FYNFLTIFLDTLKSIVTNYYAYVLDDTIEL-----LSSKDTNSEVRHLVNSSLVSAF 1511
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 340 SQQYTSSRMHIRRITEICHQFWICALINIV 429
S Y R +T + QF+IC+LIN++
Sbjct: 79 SYYYIKYRTPDSPVTHLGFQFFICSLINVL 108
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 158 FIV*ISHNFTNICFYNINLIVHRFRCIDNNCKTFARY 48
F V +S T FY+ +L++H +++ +++RY
Sbjct: 189 FAVGMSIVMTAFTFYHTSLLIHNLSTLESMSSSWSRY 225
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/47 (21%), Positives = 23/47 (48%)
Frame = +3
Query: 192 NDPDVGTALITRTADDFICSLTTLTTSGGKDCPENSLAGIEHALRVS 332
N+P+ G+ + T+L + ++ N+L ++H L++S
Sbjct: 369 NNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKIS 415
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 482 SGISGRHIAYTGQYYMDLTIFISAQIQN 399
SGISGR + T Q LTI S IQ+
Sbjct: 92 SGISGRPVESTEQLNSSLTIERSQSIQS 119
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 17 FTSVYYHDSRNNVQKFYSCYRYNGIY 94
+ S Y+ R +V +++ Y+Y GIY
Sbjct: 113 YDSYPYNIERADVVRYFILYKYGGIY 138
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 209 YRIDNKNCR*LHMFFDYINHERW*RLSR 292
Y + + R +H F Y+ E W RL R
Sbjct: 840 YTVLDNALRLMHPFMPYVTEEMWQRLPR 867
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 354 VFTDAYPKNY-GNMPSVLDLCTNKYSQVHII 443
VFT K + GN P V +CT YS+ H +
Sbjct: 16 VFTILKQKAFKGNHPCVPSVCTITYSRFHCL 46
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +3
Query: 348 IYVFTDAYPKNYGNMPSVLDLCTNKYSQVHIILTGVCYMSARNSAGRL 491
IY F P+NY + + HI L V Y S + RL
Sbjct: 45 IYYFPKLNPRNYHKFVDTISRKPTRKLVHHISLNNVSYASKASITSRL 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,829
Number of Sequences: 5004
Number of extensions: 48776
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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