Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11...    28   5.2  
11_01_0337 - 2519732-2521093                                           27   6.9  
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370...    27   6.9  
07_01_0996 - 8390744-8391361                                           27   6.9  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     27   6.9  
09_01_0120 + 1839097-1839277,1840315-1840443,1841694-1841833,184...    27   9.1  
04_03_0075 + 10726807-10727721,10728756-10729496                       27   9.1  
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757...    27   9.1  

>08_01_0016 -
           109152-109214,109296-109385,109853-109954,110046-110213,
           110510-110530,110836-110896,110987-111099,112125-112202,
           112294-112434,112532-112696,112776-112868,113096-113162,
           113285-113388,113896-114041,114303-114579
          Length = 562

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 21  LLFIIMIAEITCKSFTVVIDTTESMDDEINIIK 119
           LLF+++I       F+ ++ TT  +DD INI +
Sbjct: 520 LLFLLVIGSYLIILFSFLVITTRGLDDLINIFR 552


>11_01_0337 - 2519732-2521093
          Length = 453

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 164 SVCLHSCAFQ*SRCGYRIDNKNCR*LHMFFDYINHERW*RLSRELFGRNRACLTCERPRV 343
           ++C H  AF   +  Y I+N +   +H FF     +R    +R     + A +T  RP  
Sbjct: 232 NICCHDIAFHHGKL-YSINNNDALFVHEFFTTTAADRGGGSARVTASSDWAAVTDARPPR 290

Query: 344 NNIRLHG 364
            ++  HG
Sbjct: 291 EHLGNHG 297


>09_02_0058 -
           3704138-3704257,3704355-3704421,3704502-3704641,
           3705332-3705424,3705927-3706109,3706491-3706595,
           3706738-3706818,3706905-3707046,3707207-3707286,
           3707456-3707568,3708051-3708297,3708659-3709051
          Length = 587

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 15  ILLLFIIMIAEITCKSFTVVIDTTESMDDEINIIKANIGEVVRNL 149
           I LL  +M AEITC+    V+    S  D +  IK N+ +V++ L
Sbjct: 499 ISLLAPVMGAEITCQQLLPVV--INSSKDRVPNIKFNVAKVLQAL 541


>07_01_0996 - 8390744-8391361
          Length = 205

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -2

Query: 376 FGYASVKTYIVDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEHMKSSAVLVINAVPTSG 197
           FG+    T++VD  SLTR   S  A   +      LVV     H ++ A+ V N  P   
Sbjct: 36  FGFVRQPTFVVDDASLTRFNLSAAASSIAYNLTLKLVV-----HNRNWAMSVKNTKPMDA 90

Query: 196 SLK 188
             K
Sbjct: 91  EYK 93


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 399 VLDLCTNKYSQVHIILTGVCYMSARNSAG 485
           VLDL T+   +VH++L  +  M A N +G
Sbjct: 719 VLDLATSANEEVHVVLRRLVKMFANNLSG 747


>09_01_0120 +
           1839097-1839277,1840315-1840443,1841694-1841833,
           1842291-1842419,1845311-1845463,1845803-1845904,
           1846797-1846976,1847070-1847149,1847413-1847442,
           1847958-1848057
          Length = 407

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 366 AYPKNYGNMPSVLDLCTNKYSQVHI 440
           A+ KN+G+ P   DLC  K +Q+ +
Sbjct: 234 AHAKNFGSKPLPEDLCVKKIAQMKV 258


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 14  YFTSVYYHDSRNNVQKFYSCYRYNGIYGR 100
           +F    Y DS+  V+++ SC R  GI  R
Sbjct: 460 FFWPTMYEDSKEFVRRYPSCQRQGGITAR 488


>02_05_1123 +
           34275272-34275331,34275451-34275523,34275631-34275728,
           34276012-34276153,34276261-34276361,34276633-34276716,
           34276949-34277014,34277102-34277167,34277324-34277404,
           34277489-34277566,34277687-34277848,34277936-34278011,
           34278111-34278223,34278323-34278751
          Length = 542

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 138 VRNLNNKSTVSAYILVPFNDPDVGTALITRTADDFICSLTTLTTSGGKDCPENSLAG 308
           V  ++ K++++  I+ P N P          A  +  +L    +S G     N LAG
Sbjct: 346 VSKIDQKNSLALAIVQPDNTPKAAAPTTENVATSWELALVAAPSSNGNAATSNKLAG 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,974
Number of Sequences: 37544
Number of extensions: 289097
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)