Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 91 6e-19
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 91 6e-19
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 91 6e-19
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 91 6e-19
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 91 6e-19
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr... 48 3e-06
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 33 0.094
Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 29 2.0
Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical pr... 29 2.0
U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical pr... 29 2.0
U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.0
U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical pr... 29 2.0
U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical pr... 29 2.0
U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48717-8|CAA88609.1| 518|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical pr... 28 4.7
AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopam... 28 4.7
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 28 4.7
Z81116-2|CAB03302.1| 346|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical p... 27 8.1
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 27 8.1
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 27 8.1
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 27 8.1
AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical ... 27 8.1
AC024882-8|AAF60931.2| 340|Caenorhabditis elegans Seven tm rece... 27 8.1
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 60 SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 233
S V D T SM D++ ++ ++ + + + + YI+VPF+DP +G + T +
Sbjct: 36 SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95
Query: 234 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 413
F+ L+ + GG DCPE +L GI AL++S P S IYVFTDA K+Y VL+
Sbjct: 96 TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155
Query: 414 TNKYSQVHIILTGVC 458
K S V ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 60 SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 233
S V D T SM D++ ++ ++ + + + + YI+VPF+DP +G + T +
Sbjct: 36 SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95
Query: 234 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 413
F+ L+ + GG DCPE +L GI AL++S P S IYVFTDA K+Y VL+
Sbjct: 96 TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155
Query: 414 TNKYSQVHIILTGVC 458
K S V ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 60 SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 233
S V D T SM D++ ++ ++ + + + + YI+VPF+DP +G + T +
Sbjct: 36 SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95
Query: 234 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 413
F+ L+ + GG DCPE +L GI AL++S P S IYVFTDA K+Y VL+
Sbjct: 96 TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155
Query: 414 TNKYSQVHIILTGVC 458
K S V ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 60 SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 233
S V D T SM D++ ++ ++ + + + + YI+VPF+DP +G + T +
Sbjct: 36 SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95
Query: 234 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 413
F+ L+ + GG DCPE +L GI AL++S P S IYVFTDA K+Y VL+
Sbjct: 96 TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155
Query: 414 TNKYSQVHIILTGVC 458
K S V ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 60 SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 233
S V D T SM D++ ++ ++ + + + + YI+VPF+DP +G + T +
Sbjct: 36 SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95
Query: 234 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 413
F+ L+ + GG DCPE +L GI AL++S P S IYVFTDA K+Y VL+
Sbjct: 96 TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155
Query: 414 TNKYSQVHIILTGVC 458
K S V ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170
>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
F40F4.6 protein.
Length = 2214
Score = 48.4 bits (110), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Frame = +3
Query: 57 KSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTV--SAYILVPFNDPDVGTALITRT 230
KS +V++TT D +N + AN+ +V + N + + + LV F+ T
Sbjct: 1547 KSLLMVVETTRQNSDTVNQLIANLKNIVSAVTNNMPLWFTNFGLVTFDTTGRTFEKFDYT 1606
Query: 231 A-DDFICSLTTLTTSGGKD--CPENSLAGIEHALRVSD----PESTIYVFTDAYPKNYGN 389
+ DD I LTT + + D C L + H L D P S I++ T A P + GN
Sbjct: 1607 SIDDLITDLTTQSNAISTDGVCSMPYLGVLAHLLEHDDVIAMPNSEIFLVTPAGPSDLGN 1666
Query: 390 MPSVLDLCTNKYSQVHIILT 449
+++ N + +H +++
Sbjct: 1667 YVETMEVLFNTQAHLHYVVS 1686
Score = 29.1 bits (62), Expect = 2.0
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Frame = +3
Query: 60 SFTVVIDTTESMDDEINIIKANIGEVVRNLNNK-STVSAYILVPFNDPDVGTALITRTAD 236
+ T+VI + + I ++ +V L ++ +S +I+V F D G L+ R D
Sbjct: 420 TLTLVIRSRSQLSAVIEQATESVQSIVDLLASEPGYLSKFIVVLF---DNGKLLVNRQYD 476
Query: 237 DFICSLTTLT-------TSGGKDCPENSLAGIEHALRVSDP-ESTIYVFTDAYPKNYGNM 392
+ ++ LT + GG C + ++ + AL + +S IYV TDA P +
Sbjct: 477 SWDAAMVDLTKAIHSAPSEGG--CDDVVMSAVASALSLYPTNKSPIYVITDATPNDSAEK 534
Query: 393 PSVLDL 410
+V L
Sbjct: 535 ETVFHL 540
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
F28B4.3 protein.
Length = 2229
Score = 37.5 bits (83), Expect = 0.006
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Frame = +3
Query: 57 KSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKST--VSAYILVPFND-----PDVGTA 215
K+ V++TT D +N + AN+ +V + N + S + LV F+
Sbjct: 1550 KTLLFVVETTRQNSDTVNQLIANLKNIVTSATNFAPFWFSYFGLVTFDTTGRTFEKYNYT 1609
Query: 216 LITRTADDFICSLTTLTTSGGKDCPENSLAG--IEHALRVSDPESTIYVFTDAYPKNYGN 389
I D T ++T G P + +EH +S P S I++ T A P +
Sbjct: 1610 TIDALITDLTAQSTAISTDGACSMPYLGVLAHLLEHDNVISIPNSEIFLVTAAGPSDLNK 1669
Query: 390 MPSVLDLCTNKYSQVHIILT 449
++ N + +H I++
Sbjct: 1670 YGEAMNSLFNTEAHLHYIVS 1689
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 33.5 bits (73), Expect = 0.094
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Frame = +3
Query: 39 IAEITCKSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTV-SAYILVPFNDPD---- 203
+ + + +S + I+T SM ++++I NI +V + ++ + S++I+ +
Sbjct: 203 VVDFSSQSLIIAINTRTSMAYDLSMIIENIPTLVTDYQSQGVILSSFIVTVYRYTKSVYF 262
Query: 204 VGTALITRTADDFICSLTTLTTSGGKDCPE--NSLAGIEHALRVSDPESTIYVFTDA 368
+ T+ T T+D I L ++T + D +++A + P+ST+YVF D+
Sbjct: 263 METSAFT-TSDAMIDYLHSVTIAPSSDDQPLLDAIANSQSTQPTMRPKSTVYVFADS 318
>Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.1 protein.
Length = 520
Score = 30.7 bits (66), Expect = 0.66
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 306 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHIIL 446
G+E L VS+PE VF + YG + + NK + H++L
Sbjct: 73 GVEKTLVVSNPEFVHEVFVKQFDNFYGRKTNPIQGDPNKNKRAHLVL 119
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 367 ASVKTYI-VDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEHMKSSA 230
A +K+YI V+ + K C+I EF Q+L L+V+ VK H +A
Sbjct: 435 AQLKSYIKVEVDDVIFKKCNIGECEFLTQTLTQLIVHKVKTHDTKTA 481
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 367 ASVKTYI-VDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEHMKSSA 230
A +K+YI V+ + K C+I EF Q+L L+V+ VK H +A
Sbjct: 435 AQLKSYIKVEVDDVIFKKCNIGECEFLTQTLTQLIVHKVKTHDTKTA 481
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 84 TESMDDEINIIKANIGEVVRNLNNKSTVSAYILVPFNDPDVGTAL-ITRTADDFICSLTT 260
TE D+ + + G+ + ++ N T S I +PFN P++G L RT D I
Sbjct: 156 TEERDEALRKCQQTTGDAIVDIWN--THSVQINLPFNKPNLGIMLGGGRTDDGSIVHGPI 213
Query: 261 LTTSGGKDCP-ENSLAGIEHALRVSD 335
P +N L ++H + V+D
Sbjct: 214 YVRQIAHGSPFDNVLKKLDHIMMVND 239
>Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.2 protein.
Length = 520
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 306 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHII 443
G+E L VS+PE VF + YG + + NK + H++
Sbjct: 73 GVEKTLIVSNPEFVHEVFVKQFDNFYGRKTNPIQGDPNKNKRAHLV 118
>U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical
protein C27H5.2d protein.
Length = 464
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 314 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 222
LD +LWT TA CS Y IG SC
Sbjct: 23 LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53
>U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical
protein C27H5.2b protein.
Length = 459
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 314 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 222
LD +LWT TA CS Y IG SC
Sbjct: 23 LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53
>U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical
protein C27H5.2c protein.
Length = 491
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 314 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 222
LD +LWT TA CS Y IG SC
Sbjct: 23 LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53
>U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical
protein C27H5.2a protein.
Length = 522
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 314 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 222
LD +LWT TA CS Y IG SC
Sbjct: 23 LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53
>U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical
protein K11G9.2 protein.
Length = 529
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 105 INIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTADDFICSLTTLTTSGG 278
+N++ + G V NL + V Y+ +P+ P +G + + + T T G
Sbjct: 14 LNVLNSTCGPVQGNLYRHGNEEVHGYLGIPYAQPPIGILRFKKPVSADVWTETRDCTKYG 73
Query: 279 KDCPENSL 302
CP + +
Sbjct: 74 PRCPPSGM 81
>Z48717-8|CAA88609.1| 518|Caenorhabditis elegans Hypothetical
protein T10B9.10 protein.
Length = 518
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 306 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHII 443
G+E L +SDPE VF + YG + + NK +V ++
Sbjct: 73 GVEKTLVISDPEFVHEVFVKQFDNFYGRKLTAIQGDPNKNKRVPLV 118
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 113 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 24
N+N+I + F + NC TF+R Y D+ Q
Sbjct: 423 NVNVITNDF--VSENCTTFSRRSSYADDSQ 450
>Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical
protein K09G1.4a protein.
Length = 705
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 113 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 24
N+N+I + F + NC TF+R Y D+ Q
Sbjct: 288 NVNVITNDF--VSENCTTFSRRSSYADDSQ 315
>Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical
protein W02B12.1 protein.
Length = 382
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 269 ERW*RLSRELFGRNRACLTCERPRVNNIRLHG 364
E W +L G N C+ CE P N+ LHG
Sbjct: 161 EDW-KLVNIFIGANDICVYCEDPYFNSTALHG 191
>Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.5 protein.
Length = 520
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 306 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHII 443
G+E L VSDPE VF + Y + L +K ++H++
Sbjct: 73 GVEKTLVVSDPEFVHEVFVKQFDNFYARKQNPLQGDPDKDPRIHLV 118
>AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopamine
receptor shortvariant protein.
Length = 705
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 113 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 24
N+N+I + F + NC TF+R Y D+ Q
Sbjct: 288 NVNVITNDF--VSENCTTFSRRSSYADDSQ 315
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 113 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 24
N+N+I + F + NC TF+R Y D+ Q
Sbjct: 423 NVNVITNDF--VSENCTTFSRRSSYADDSQ 450
>Z81116-2|CAB03302.1| 346|Caenorhabditis elegans Hypothetical
protein T06C12.2 protein.
Length = 346
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 15 ILLLFIIMIAEIT-CKSFTVVIDTTESMDDEI-NIIKANIGEVVRNLNNKSTVSAYILVP 188
+L + +MI I C +F ++ + D+ + NII+ N + STV+ YIL+P
Sbjct: 131 VLWISYLMIPAICYCVAFYQLLRPNDDSDEYLRNIIRENYDLEI------STVARYILIP 184
Query: 189 FND 197
++D
Sbjct: 185 YSD 187
>Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 90 SMDDEINIIKANIGEVVRNLNNKSTVSAYILVPFN 194
S DD + I+K + G ++ +L+NK Y ++PF+
Sbjct: 125 SFDDTMGILKCDSGFILEDLDNKLAKLGY-MMPFD 158
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 421 LLVHKSKTDGIFP*FFGYASVKTYIVDSGSLTRKACSIPA 302
L +H K D FP FGY++ Y+ G RK +PA
Sbjct: 248 LTIH-DKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSRLPA 286
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 421 LLVHKSKTDGIFP*FFGYASVKTYIVDSGSLTRKACSIPA 302
L +H K D FP FGY++ Y+ G RK +PA
Sbjct: 518 LTIH-DKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSRLPA 556
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 421 LLVHKSKTDGIFP*FFGYASVKTYIVDSGSLTRKACSIPA 302
L +H K D FP FGY++ Y+ G RK +PA
Sbjct: 518 LTIH-DKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSRLPA 556
>AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 90 SMDDEINIIKANIGEVVRNLNNKSTVSAYILVPFN 194
S DD + I+K + G ++ +L+NK Y ++PF+
Sbjct: 125 SFDDTMGILKCDSGFILEDLDNKLAKLGY-MMPFD 158
>AC024882-8|AAF60931.2| 340|Caenorhabditis elegans Seven tm
receptor protein 168 protein.
Length = 340
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +3
Query: 6 YFNILLLFIIMIA---EITCKSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTVSAY 176
+FNI+L+++I+ ++ + +V SM +I+ +G V+ + + +
Sbjct: 20 FFNIILIYLILTKSPKKMGTYKYLLVYFCCFSM--LYSILDIIVGPVIHSHGSSFFMMMK 77
Query: 177 ILVPFNDPDVGTALITRTADDFICSLTTLT 266
+ + N P+VG L++ F S+TT++
Sbjct: 78 LGILKNHPEVGFLLVSLLCGCFAVSITTIS 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,340,195
Number of Sequences: 27780
Number of extensions: 271695
Number of successful extensions: 752
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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