Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53390.1 68418.m06634 expressed protein                             34   0.050
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    31   0.62 
At5g36940.1 68418.m04430 amino acid permease family protein simi...    27   5.8  
At5g06500.1 68418.m00730 MADS-box family protein contains simila...    27   5.8  
At5g01450.1 68418.m00058 expressed protein                             27   5.8  
At3g60910.1 68416.m06814 expressed protein low similarity to PIR...    27   5.8  
At2g34930.1 68415.m04288 disease resistance family protein conta...    27   5.8  
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta...    27   5.8  
At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil...    27   7.7  
At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kina...    27   7.7  
At3g01780.1 68416.m00118 expressed protein est hit,                    27   7.7  

>At5g53390.1 68418.m06634 expressed protein
          Length = 486

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 30/114 (26%), Positives = 52/114 (45%)
 Frame = +3

Query: 108 NIIKANIGEVVRNLNNKSTVSAYILVPFNDPDVGTALITRTADDFICSLTTLTTSGGKDC 287
           +I++ N G+  R +  K  V  +++VP  DPD+      +  +D+I  LTT+     K  
Sbjct: 64  SILEMNNGKKPRWVRTKVKVEEHVIVPDVDPDIENP--DQYLEDYISKLTTIPMDLSKPL 121

Query: 288 PENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHIILT 449
            E  L G+    + S+ ES   +       +  ++ S+L  CT K S    + T
Sbjct: 122 WEMHLLGV----KTSNAESYAILKIHHSLGDGMSLMSLLLACTRKTSDPEALPT 171


>At5g39500.1 68418.m04783 pattern formation protein, putative
           similar to SP|Q42510 Pattern formation protein EMB30
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1443

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 165 VSAYILVPFNDPDVGTALITR-TADDFICSLTTLTTSGGKDCPENSLAGIEHALRVSD 335
           V AY ++  N       + TR T +DFI +  T+  +GG D P   L+ I H++R S+
Sbjct: 689 VLAYSIILLNTDQHNAQVKTRMTEEDFIRNNRTI--NGGADLPREYLSEIYHSIRHSE 744


>At5g36940.1 68418.m04430 amino acid permease family protein similar
           to SP|Q09143 High-affinity cationic amino acid
           transporter-1 (CAT-1) {Mus musculus}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 609

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 397 DGIFP*FFGYASVKTYIVDSGSLTRKACS 311
           DG+ P +F Y + +T +  +G++T   C+
Sbjct: 346 DGLLPSYFSYVNQRTQVPINGTITTGVCA 374


>At5g06500.1 68418.m00730 MADS-box family protein contains
           similarity to MADS-box transcription factor
          Length = 242

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 494 VKATSGISGRHIAYTGQ--YYMDLTIFISAQIQN 399
           V + SG +G ++  TG+  YY+D  +F+  Q+QN
Sbjct: 165 VASGSGGNGLNMMETGRSFYYVDKWVFVDPQVQN 198


>At5g01450.1 68418.m00058 expressed protein
          Length = 444

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 284 LSRELFGRNRACLTCERPRVNNIRLHGC--ISEELR--KYAISFGFV 412
           LS  LFG N A LT   P++NN +   C  +S E R   Y +  G V
Sbjct: 275 LSVPLFGTNAAVLTSPGPKLNNSKNEFCAKLSYEPRWIAYIVCMGVV 321


>At3g60910.1 68416.m06814 expressed protein low similarity to
           PIR|I46078 endothelin converting enzyme from Bos
           primigenius taurus
          Length = 252

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +3

Query: 60  SFTVVID--TTESM---DDEINIIKANIGEVVRNLNNKSTVSAYILVPFNDPDVGTALIT 224
           SF  +ID  T +S+    D +      +GEV R +    T   Y L+ + DP V    +T
Sbjct: 115 SFDTIIDKGTLDSLMCGSDALLSASRMLGEVSRLIKPGGT---YFLITYGDPKVRMPHLT 171

Query: 225 RTADDFICSLTTLTTSGGK 281
           R+A ++  SL  +   G K
Sbjct: 172 RSAYNWKISLYIIPRPGFK 190


>At2g34930.1 68415.m04288 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 905

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 321 LRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNK 422
           L  ++    I+ F DA+ +N GN    LDL +NK
Sbjct: 327 LSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNK 360


>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
           putative similar to Swiss-Prot:P33331 nuclear transport
           factor 2 (NTF-2) (Nuclear transport factor P10)
           [Saccharomyces cerevisiae]
          Length = 126

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = +3

Query: 300 LAGIEHALRVSD-------PESTIYVFTDAYPKNY 383
           LAG EHAL+ S        P+ + YVF D +  NY
Sbjct: 91  LAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125


>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 341

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 282 DCPENSLAGIEHALRVSDPEST 347
           DCP+    G++HA ++SD  S+
Sbjct: 246 DCPDQEKEGLKHAAKLSDAASS 267


>At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 815

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 373 GYASVKTYIVDSGSLTRKACSIPAKE---FSGQSLPPLVVN 260
           GY+ + T ++DSGS  +   +IP  E     G  +  LVVN
Sbjct: 320 GYSDLSTAVLDSGSSVQYKANIPILEREYMQGVLISELVVN 360


>At3g01780.1 68416.m00118 expressed protein est hit,
          Length = 1176

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 96  DDEINIIKANIGEVVRNLNNKSTVS 170
           DD +NII ANI +V+ NL+  +T S
Sbjct: 609 DDPLNIIIANIHKVLFNLDAAATTS 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,431,474
Number of Sequences: 28952
Number of extensions: 244087
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)