Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    39   5e-04
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   1.3  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   3.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   5.2  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.2  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   5.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.8  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   6.8  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = +1

Query: 223 FFPPMYVQRYAAIVDCLLDERWSGKLEKVVDLGYHDMSFIKYL---KEVSGIKSILGVDL 393
           F+PP++VQR   +   L   +    +  ++D+G  D  F+ YL    +   I+ + G+D+
Sbjct: 6   FYPPLHVQRRRKLFKIL---QGGFPVRSLLDIGCGDARFLSYLVPCNDQVPIEFLAGIDI 62

Query: 394 ETIPLQCSSDLLS--CNEYAPKRETPLQISLLQGNAAD 501
               ++ +++ L     ++   R  PL I LL GN  D
Sbjct: 63  NEQSIERATEALQVRTEDFLQLRWRPLHIELLLGNIKD 100


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 122 KSSHCPSLKVPLNLMTMNPMKMFSPNMTMKKALFSSHQ--CMYSDMLLLSTVYWTNGGAE 295
           K  + P      N+     MK   P +T+ K L S     C+Y    +LS + WT    E
Sbjct: 233 KEQYIPMTSHSTNIPVKPQMKKSKP-ITIGKPLISMEHLNCVYWGRKVLSDINWTIREGE 291

Query: 296 NW 301
            W
Sbjct: 292 RW 293


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 503 GSAALPWSSEICNGVSLLGAYSLQ 432
           GS+   W S+ CN V L   Y LQ
Sbjct: 279 GSSTWSWPSQNCNSVLLKDIYKLQ 302


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 217 VIFFPPMYVQRYAAIVDCLLDERWSGKLEKVVDLGYHD---MSFIKYLKEVS 363
           +IF PP Y   Y +IV  L D   SG  E +  L +HD   +S I+Y K+++
Sbjct: 127 IIFRPPRYGWNYGSIVINLRD---SG--ESLPPLFFHDDECISTIEYGKQIT 173


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
 Frame = -1

Query: 455 LLGAYSLQLNKSDEHCNG-----IVSRSTPKIDLIPETSFRYLMKLISW*PRSTTFSNFP 291
           LL  Y  QLNK+ E C G     I SRST    L  E+      KL+S    S       
Sbjct: 189 LLDNYKKQLNKASESCKGNYQACIESRSTLITSL--ESLIEEQKKLLSEEEESLKSVESI 246

Query: 290 LHRSSSRQSTIAAYRCTYIG 231
           +    +++ST A    T  G
Sbjct: 247 ISNLENKESTTATSTLTDAG 266


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -1

Query: 482 SSEICNGVSLLGAYSLQLNKSDEHCNGIVSRSTPKIDLIPETSFRYLMKLISW*PRSTTF 303
           ++++  G++  G Y+   ++ D +    VSR+   I LI    +      I+W  R+T  
Sbjct: 106 NAQVAIGLATAGYYTTNSSRRDHY----VSRAESIISLIINKGWNQQRGGIAWHTRTTGP 161

Query: 302 SNFPLHRSSSRQSTIAAYR 246
               L+  S+  S +AA R
Sbjct: 162 PWTNLNACSTSMSAVAALR 180


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 277  DERWSGKLEKVVDLGYHDMSFIK 345
            +E WSG +E  + +  HD  F++
Sbjct: 1819 EEYWSGLMEVTIQIWKHDKGFLE 1841


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 259 IVDCLLDERWSGKLEKVVDLGYHDMSFIKYLKEV-SGIKSILG 384
           ++D L D+     +  V  +G H  S + YL++  S    I+G
Sbjct: 405 LIDLLTDDPTQASVHMVTMMGIHPNSLLDYLEQYNSSFDKIIG 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,130
Number of Sequences: 5004
Number of extensions: 41000
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)