Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    34   0.060
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218...    31   0.74 
04_03_0268 - 13663387-13663505,13663935-13664025,13664788-136648...    27   6.9  
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382...    27   6.9  

>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
 Frame = +1

Query: 220 IFFPPMYVQRYAAIVDCLLDERWSGKLEKVVDLGYHDMSFIK-------YLKEVSGIKSI 378
           +F   MY   Y +++    + R    L+ ++DLG   +  ++       Y + V GI SI
Sbjct: 594 LFLCIMYTWNYGSVLKYQSEMRGKISLDFILDLG-STLGTVRVPGIGLVYNELVQGIPSI 652

Query: 379 LGVDLETIPLQCSSDLLSCNEYAPKRETPLQISLLQGNAADPDYRL 516
            G  L T+P   S+ +  C +Y P    P +   L       DY +
Sbjct: 653 FGHLLVTLPAMHSTIVFVCIKYVPVPYVPFEERFLFRRIGQKDYHM 698


>03_05_0415 -
           24019330-24019539,24020948-24021099,24021765-24021846,
           24021930-24022068,24022775-24023127
          Length = 311

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 491 LPWSSEICNGVSLLGAYSLQLNKSDEHCNGIVSR 390
           +PWS E+CN V L+G    ++        G V+R
Sbjct: 71  IPWSRELCNSVRLIGTVGTEVELRQLPSGGSVAR 104


>04_03_0268 -
           13663387-13663505,13663935-13664025,13664788-13664874,
           13665849-13665904,13666788-13666841,13667413-13667523,
           13668293-13668419
          Length = 214

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 322 YHDMSFIK-YLKEVSGIKSILGVDLETIPLQCSSDLLSCNEYAPKRE 459
           Y D+ F+K Y+  ++ I S + VD+ +I   CS       ++AP++E
Sbjct: 138 YMDLLFLKKYMPHLAAIFSHVIVDVSSISALCSRWFPKERKHAPRKE 184


>01_06_1640 +
           38836977-38836988,38837694-38838047,38838164-38838294,
           38838554-38838860,38839036-38839349,38839507-38839645
          Length = 418

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 374 QFWELI-LRLYHCSAHQTC*VVMSMHLKEK 460
           + W+L+ L    CSA +TC V +  H KEK
Sbjct: 349 RIWQLLELHSRMCSALETCHVPLCRHFKEK 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,634
Number of Sequences: 37544
Number of extensions: 239975
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)