Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)                       45   4e-05
SB_44008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_16926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)
          Length = 501

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
 Frame = +1

Query: 205 DEKGVIFFPPMYVQRYAAIVDCLLDERWSGKLEKVVDLGYHDMSFIKYL-KEVSGIKSIL 381
           ++ G  F PP+Y QRY  +++ + +     K ++V+D G  +   ++ L    + I+ ++
Sbjct: 14  EQLGPKFDPPVYRQRYHRVIEVVKEH----KAKRVLDFGCAEAKMLRSLINSTTNIEELV 69

Query: 382 GVDLETIPLQCSSDLLS--CNEYAPKRETPLQISLLQGNAADPDYR 513
           GVD++   L+ S   +     +Y   R  PL +SL QG+ +  D R
Sbjct: 70  GVDIDRDLLEDSIFRIRPLTTDYLTPRPHPLAVSLYQGSISKADDR 115


>SB_44008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 249 ICCYCRLSTGRTVERKIGKGGRPWLP 326
           ICC+CR+    TV+ + G  G+P +P
Sbjct: 35  ICCWCRIKLIDTVDLEGGPVGKPVVP 60


>SB_16926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 45 YRYSNFNIFPPVSFNRIR 98
          Y Y NF IF P+ F  IR
Sbjct: 7  YHYGNFKIFSPIKFGVIR 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,862
Number of Sequences: 59808
Number of extensions: 268981
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)