Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    30   0.24 
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    29   0.42 
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    28   0.73 
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   1.3  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.2  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   3.0  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   3.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   3.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.9  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   6.8  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 314 TCRCVADDAWARHAVLLGAAIRHIAIEDFCDAALRRVRHLGYGAL 180
           TC+C  +D       LLG   RH+   D C   +  V  L  G L
Sbjct: 477 TCKCSEEDEAGLKEFLLGVIDRHLKEYDSCRVRMEHVLQLDQGYL 521


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = -1

Query: 512 GWLPLTSTGCRISASVHHLGGRVRRTSAV-HFRITKLDVTADGVGDQW---RNGSIARCL 345
           G +P+      +      +GG+V     + H +++K++   DG+G      +N S+ R  
Sbjct: 100 GKIPILGVCMGLQCIFETMGGKVDSAGEIIHGKVSKIN--HDGLGFYQGIPQNISVTRYH 157

Query: 344 SEKSRVSVTRTCRCVADDAWARHAVLLGAAIRHIAIE 234
           S   ++S    C  V   +W  + V++GA  +  AIE
Sbjct: 158 SLAGKISSLPDCLDVT--SWTENGVIMGARHKKYAIE 192


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +3

Query: 375 LITDTIRSNIQFGDSEMNG-----GSPTHSPAK 458
           ++ DT R  I+F DS +NG     G+P  +PAK
Sbjct: 36  VMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAK 68


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 332 ETFRTGSEQWTRFSIDHRHH 391
           + F  G+ +W+ F I+H HH
Sbjct: 160 KAFYWGTSEWSAFEIEHAHH 179


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 268 RTAWRAHASSATHRHVRVTLTRDFSDRQRAMDPFLH*SPTPSAV 399
           R ++  H+SS++H  +   +  DFS    ++ P  H S   +AV
Sbjct: 208 RQSFPPHSSSSSHNSLHEPVIYDFSSENPSIHPSNHLSSQKNAV 251


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 250 RMAAPRRTAWRAH---ASSATHRHVRVTLTRDFSDRQRAMDPFLH*SPTPSAVTSSLVI 417
           R+ AP R+    H   +SS  HRH     +  FS +  A    +  SPT   V SS V+
Sbjct: 413 RILAPSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPT--LVESSTVV 469


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 375 LITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSA 476
           L+T +  + +  GD  MNG S     A +MN S+
Sbjct: 457 LLTGSWYNGVSIGDCIMNGHSTARKLASLMNSSS 490


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +3

Query: 225 AEIFNGDMTDGSPKKNGMAXXXXXXXXXXXXXXXHSRLFGQAASNGPVSPLITDTIRSNI 404
           AE F+    D SPK    A                S+ FG + SN P    + DT +S+ 
Sbjct: 508 AERFHSRSVDASPK----AVRRESRSFFPSLTRKRSKFFGSSQSNSPKDSPLRDTHKSSD 563

Query: 405 QFGDSE 422
           +  +S+
Sbjct: 564 EHSESK 569


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 497 TSTGCRISASVHHLGGRVRRTSAVHFRITKLD 402
           +STG ++S S+  L    +  S  H  ++K+D
Sbjct: 79  SSTGRKVSGSIQRLASNFKNPSNPHADVSKID 110


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 330 SRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREP 509
           +R  G       V  L   + +SNI+         SPT SP +  +G+ +S+ S   ++ 
Sbjct: 448 TRTVGTPTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKS 507

Query: 510 AE 515
           A+
Sbjct: 508 AQ 509


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 274 AWRAHA-SSATHRHVRVTLTRDFSDRQR 354
           AW A    S TH H   T+ +D S RQ+
Sbjct: 80  AWNAKMIMSNTHMHDSTTIFKDVSSRQK 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,501
Number of Sequences: 5004
Number of extensions: 45362
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)