Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306D06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0100 + 27679280-27680320 33 0.18
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 31 0.42
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 29 2.3
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 28 4.0
12_01_0070 - 602302-602529,603210-603374 28 5.2
04_01_0176 + 2003707-2004130,2004689-2004861 28 5.2
11_01_0069 - 557951-558412,558508-558684,559359-559523 27 6.9
08_02_1005 + 23468230-23468994 27 6.9
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 27 6.9
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 27 6.9
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 27 9.1
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440... 27 9.1
06_03_1233 + 28584321-28585160,28585215-28585457 27 9.1
06_03_0941 + 26179682-26182327 27 9.1
04_04_0884 + 29084341-29084590,29084670-29084800,29084890-290851... 27 9.1
>05_07_0100 + 27679280-27680320
Length = 346
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +2
Query: 137 NVVYFNVCWPSGGFQELHNQGA*RA*ELHRRNL---QWRYDGWQPQEERHGAPTRRPRHT 307
N+ Y CW G + L R EL+R NL QW+ R A RRP T
Sbjct: 33 NLPYREDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSRRGAAARRRPPRT 92
Query: 308 DTSA*HSLETFR 343
D + ++T +
Sbjct: 93 DVQCKNRVDTLK 104
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 330 SECHAD--VSVCRGRRVGAPCRSSWGCHPSYRH*RFLR 223
SECH + +S + VGAP R+ HP Y H +L+
Sbjct: 221 SECHINHFISTIQSTNVGAPARTVGWRHPGYIHTSYLK 258
>07_01_0276 +
2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 242 RYDGWQPQEERHGAPTRRPRHTDTSA*HSLETFRTGSEQWT 364
R++ W+ ++ HG + R +D S+ +S++ R E+W+
Sbjct: 110 RWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWS 150
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 351 ASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGERE 506
+++ P S T S I GD++ S TH + NG + TPS+ +RE
Sbjct: 406 STSSPFSLYNCRTASSTINAGDAQACSTSATHIDLENKNGDS-KTPSQDKRE 456
>12_01_0070 - 602302-602529,603210-603374
Length = 130
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 419 RITKLDVTADGVGDQWRNGSIARCLSEKSR 330
R+TKL+ T G+ D W RC E+++
Sbjct: 46 RLTKLNSTTKGLRDAWEEVKQMRCREEETK 75
>04_01_0176 + 2003707-2004130,2004689-2004861
Length = 198
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = -2
Query: 493 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 401
+LG ALPFI+ G C L + E SP WM
Sbjct: 99 QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135
>11_01_0069 - 557951-558412,558508-558684,559359-559523
Length = 267
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 419 RITKLDVTADGVGDQWRNGSIARCLSEKSR 330
R+TKL+ T G+ D W RC E+++
Sbjct: 46 RLTKLNSTIKGLRDAWEEVKQMRCREEETK 75
>08_02_1005 + 23468230-23468994
Length = 254
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 518 VFGWLPLTSTGCRISASV-HHLGGRVRRTSAVH 423
+F LP+ +TGC+++A + H GGR A H
Sbjct: 45 MFKLLPMLTTGCKMAALLGRHSGGRAAPLLADH 77
>08_01_0505 -
4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 381 TDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAY-STPSRGEREPA 512
T+++R+NI G + + G+ H P++ + S Y S ++ ER P+
Sbjct: 96 TNSVRNNITNGTTPLRVGNLRHDPSEDIRSSNYPSLYNQRERGPS 140
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 442 VGLPPFISESPNWMLLR 392
V + PF+SESP W L+R
Sbjct: 249 VAVLPFVSESPRWYLVR 265
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 160 TNIKVDDISQTL*FTENLEKNLS*AKR*NTITYSKNTQPNVKCDFC 23
TN V +S L F E L R NT Y + ++KC FC
Sbjct: 248 TNSTVVQVSSILPFYEGLYSRWGGIMRYNTSRYRELPHISIKCVFC 293
>08_01_0506 -
4400776-4400937,4401164-4401253,4401334-4401546,
4401725-4401817,4402357-4402551,4402643-4402735,
4403554-4403649,4404186-4404633,4405078-4405745,
4406822-4406884,4408650-4408847,4409265-4409982,
4410447-4410580
Length = 1056
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 381 TDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAY-STPSRGEREPA 512
T+ +R+NI G + + G+ H P++ + S Y S ++ ER P+
Sbjct: 92 TNNVRNNITNGTTPLRVGNLRHDPSEDIRSSNYPSLYNQRERGPS 136
>06_03_1233 + 28584321-28585160,28585215-28585457
Length = 360
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 294 RRVGAPCRSSWGCHPS 247
R +GAPCR +W +PS
Sbjct: 259 RLLGAPCRQTWPSYPS 274
>06_03_0941 + 26179682-26182327
Length = 881
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 470 SVHHLGGRVRRTSAVHFRITKLDVTADGVGDQW 372
S H L GRV FR+ LD+ A +W
Sbjct: 42 SQHQLRGRVEVLDGCSFRVAALDLLAGSASARW 74
>04_04_0884 +
29084341-29084590,29084670-29084800,29084890-29085132,
29085223-29085481,29085597-29085832
Length = 372
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 475 ALPFIILAGECVGLPPFISESPNWMLLRMVSVINGETGP 359
AL FI AGEC +++ N L RM+ +N E GP
Sbjct: 234 ALEFIP-AGECSAFANQLTQGYNKKLKRMIYKLNQEMGP 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,099
Number of Sequences: 37544
Number of extensions: 340984
Number of successful extensions: 995
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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