Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)                29   2.3  
SB_54436| Best HMM Match : PH (HMM E-Value=0.18)                       29   2.3  
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)                28   4.1  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_52039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)                   28   5.4  
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)                    27   7.1  
SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 27   7.1  
SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36)                    27   7.1  
SB_37597| Best HMM Match : ResIII (HMM E-Value=0.28)                   27   7.1  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                27   7.1  

>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 372 PLITDTIRSNIQFGDSEMNGGSP--THSPAKMMNGSAYSTPSRGEREPA 512
           P  ++  +SN   GDS   G SP  T SPA++ + +  S+P+ G   PA
Sbjct: 488 PSFSEWKKSNESTGDSSSGGASPARTTSPARITSPARASSPA-GRASPA 535


>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
          Length = 782

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 233 LQWRYDGWQPQEERHGAPTRRPRHTDTSA*HSLETFRTGS 352
           L+W+Y GW    + HG   + PR       HSLE + T +
Sbjct: 707 LEWKYAGWGTVHQVHGKTIQTPRRL-FIVDHSLERWITNA 745


>SB_54436| Best HMM Match : PH (HMM E-Value=0.18)
          Length = 940

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +3

Query: 126 SVCEMSSTLMFVGLPEDSK----SSITKVPNAPKSC 221
           S C+++ TL++VG  EDS+    S   ++P  PK C
Sbjct: 813 SSCKLTPTLLYVGCCEDSREMMCSEFAQMPYIPKWC 848


>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
          Length = 772

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 339 FGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 491
           F  + SNG +SP ++  + S++  G S   GGS T+    +  G +  T S
Sbjct: 264 FSSSLSNG-MSPSLSQGLSSSLSNGLSSYTGGSDTNGLGSLAAGYSQGTGS 313


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 177 SKSSITKVPNAPKSCIAEIFNG 242
           +KSSIT+V + P S I++IF G
Sbjct: 473 NKSSITRVASFPSSLISDIFGG 494


>SB_52039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 233 LQWRYDGWQPQEERHGAPTRRPRHTDTSA*HSLETFRTGS 352
           L+W+Y GW      HG   + PR       HSLE + T +
Sbjct: 44  LEWKYAGWGTVHRVHGKTIQNPRRLFIID-HSLEGWITNA 82


>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 735

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 114 SVNQSVCEMSSTLMFVGLPEDSKSSITKVPNAPKSCIAEIFNGDMTDGS 260
           S+ +S  E  S +  +  PE   S +T +P    SC+ E+  G    GS
Sbjct: 226 SMGKSPEETESRVSLLTPPEQRHSKLTSLPPIRSSCVTEMRPGTGESGS 274


>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
          Length = 608

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 262 PRRTAWRAHASSATH--RHVRVTLTR 333
           PRR AWR H  + TH  RH+     R
Sbjct: 291 PRRHAWREHKKAGTHTRRHMHAQKAR 316


>SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 233  LQWRYDGWQPQEERHGAPTRRPRHTDTSA*HSLETFRTGS 352
            L+W+Y GW   +   G   + PR     A HSLE + T +
Sbjct: 1034 LEWKYAGWGTVQRVQGKTIQTPRRLLIIA-HSLEGWITNA 1072


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 354 SLPVRKVSSECHADVSVCRGR 292
           SLPV  V   CH +++V +GR
Sbjct: 17  SLPVHFVDGSCHTNINVVKGR 37


>SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36)
          Length = 624

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 218 LHRRNLQWRYDGWQPQEERHGAPTRRPRHTDTSA*HSLETFRTGS 352
           L+  +L+W+Y+GW       G   + PR       HSLE + T +
Sbjct: 481 LNGLSLEWKYEGWGTVHRVQGKTIQNPRRLFIID-HSLEGWITNA 524


>SB_37597| Best HMM Match : ResIII (HMM E-Value=0.28)
          Length = 658

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 233 LQWRYDGWQPQEERHGAPTRRPRHTDTSA*HSLETFRTGS 352
           L+W+Y GW   +   G   + PR     A HSLE + T +
Sbjct: 504 LEWKYAGWGTVQRVQGKTIQTPRRLLIIA-HSLEGWITNA 542


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 266 EERHGAPTRRPRHTDTSA*HSLETFRTGS----EQWTRFSIDHRHH 391
           + R G+     +HTDT A H+    R GS    E+ T    DH +H
Sbjct: 206 KHREGSDITHEKHTDTIADHTNHKHREGSDITHEKHTDTIADHTNH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,520,027
Number of Sequences: 59808
Number of extensions: 382033
Number of successful extensions: 1162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)