Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21250.1 68416.m02685 ABC transporter family protein similar ...    29   1.4  
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c...    28   3.3  
At2g47980.1 68415.m06004 expressed protein                             28   3.3  
At2g37840.2 68415.m04646 protein kinase family protein contains ...    28   3.3  
At2g37840.1 68415.m04645 protein kinase family protein contains ...    28   3.3  
At5g49460.1 68418.m06119 ATP-citrate synthase, putative / ATP-ci...    28   4.4  
At3g06650.1 68416.m00774 ATP-citrate synthase, putative / ATP-ci...    28   4.4  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    27   5.8  
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain...    27   7.7  
At3g20660.1 68416.m02615 organic cation transporter family prote...    27   7.7  

>At3g21250.1 68416.m02685 ABC transporter family protein similar to
            MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
            thaliana]
          Length = 1294

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = -1

Query: 410  KLDVTADGVGDQWRNGSIARCLSEKSRVSVTRTCRCVADDAWARHAVLLGAAIRHIAIED 231
            KLD +    G+ W  G   R L    RV + R    V D+A A       A I+ I  E+
Sbjct: 1170 KLDSSVSDEGENWSVGQ--RQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREE 1227

Query: 230  FCDAALRRVRH 198
            F D  +  V H
Sbjct: 1228 FADCTVITVAH 1238


>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain; snoR29 gene for small
           nucleolar RNA GI:15706258
          Length = 917

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
 Frame = +3

Query: 168 PEDSKSSITKVPNAP-KSCIAEIFNGD--MTDGSPKKNGMAXXXXXXXXXXXXXXXHSRL 338
           P D   S    P+A  K  + E F+     TDG    +G+                   L
Sbjct: 352 PSDIPDSFQAGPSAKGKGKVHEEFSTPPPRTDGHDILHGLIMEQVNSKFRELKDELKVEL 411

Query: 339 FGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTP 488
           FG    N  +   + D I SN++ GD   +  S   SP K  +G    TP
Sbjct: 412 FGDLTENSLLKDELLDEIISNLRHGDKFPSPKSGGKSP-KSTSGDGIVTP 460


>At2g47980.1 68415.m06004 expressed protein
          Length = 1098

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 422  NERRKSYALSRQDDERKRLFDTQS 493
            N RR+     R + ERKRLFD QS
Sbjct: 1030 NVRRRGRPRKRPETERKRLFDEQS 1053


>At2g37840.2 68415.m04646 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 596

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 336 LFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 491
           LF ++ S+    P+I  T  S  QFG  +    +P+ S   +  G A+  PS
Sbjct: 316 LFNRSISSTAPMPIIGATSNSIGQFGSLDSQYSAPSTSHGSLDLGDAFEQPS 367


>At2g37840.1 68415.m04645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 733

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 336 LFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 491
           LF ++ S+    P+I  T  S  QFG  +    +P+ S   +  G A+  PS
Sbjct: 453 LFNRSISSTAPMPIIGATSNSIGQFGSLDSQYSAPSTSHGSLDLGDAFEQPS 504


>At5g49460.1 68418.m06119 ATP-citrate synthase, putative /
           ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
           enzyme, putative strong similarity to ATP:citrate lyase
           [Capsicum annuum] GI:13160653; contains Pfam profiles
           PF00549: CoA-ligase, PF02629: CoA binding domain
          Length = 608

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 211 GALGTLVMELLESSGRPTNIKVDDISQ 131
           GA+G+L ++LL  SG  T  ++D+I Q
Sbjct: 540 GAIGSLFLDLLAGSGMFTKQEIDEIVQ 566


>At3g06650.1 68416.m00774 ATP-citrate synthase, putative /
           ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
           enzyme, putative strong similarity to ATP:citrate lyase
           [Capsicum annuum] GI:13160653; contains Pfam profiles
           PF00549: CoA-ligase, PF02629: CoA binding domain
          Length = 608

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 211 GALGTLVMELLESSGRPTNIKVDDISQ 131
           GA+G+L ++LL  SG  T  ++D+I Q
Sbjct: 540 GAIGSLFLDLLAGSGMFTKQEIDEIVQ 566


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 348 AASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH 518
           A S+ P +P  +    S +    S     +P+HSPA   + S    PS        H
Sbjct: 199 ATSHSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSH 255


>At4g27910.1 68417.m04006 PHD finger protein-related / SET
           domain-containing protein (TX4) nearly identical over
           285 amino acids to trithorax 4 [Arabidopsis thaliana]
           GI:16118405; contains Pfam profiles PF00856: SET domain,
           PF00855: PWWP domain; identical to cDNA trithorax 4
           (TX4) partial cds GI:16118404
          Length = 1027

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 263 QEERHGAPTRRPRHTDTSA*HSLETFRTGSEQWTRFSI--DHRHHPQ 397
           +EE     TR PRH  ++A  +L TFR   E+   FS   +  HH Q
Sbjct: 834 EEEAIPHHTRGPRHHASAAIQTLNTFRHVPEEPKSFSSFRERLHHLQ 880


>At3g20660.1 68416.m02615 organic cation transporter family protein
           similar to organic cation transporter OCT3 [Rattus
           norvegicus] GI:3273722, organic cation transporter 3
           [Mus musculus] GI:4454795; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 534

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 430 PFISESPNWMLLR 392
           PFISESP W L+R
Sbjct: 266 PFISESPRWYLVR 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,615
Number of Sequences: 28952
Number of extensions: 254890
Number of successful extensions: 685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)