Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   3.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.2  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   9.0  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   9.0  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   9.0  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 264 LRC*GILYLCTYARILSIHRRSILWRKEEQQSSNPYLS 151
           + C  + +   YA+ L IHR S L+    + + N Y S
Sbjct: 175 IHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCS 212


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = -3

Query: 300 DQTCTDLRQARRLRC*GILYLCTYARILSIHRRSILWRK 184
           D + T LR+    +   +++ CTYA +++ + + ++WR+
Sbjct: 46  DSSLTHLRKKSYTK---VVHDCTYALVINPYDKKVIWRR 81


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 65   FSD*IRNKSRLLKYWIWK-----FTFRLKGILSQDKYGLEDCCSS 184
            F+  ++  S L+ +W W      FT+ ++G+LS   +GL   C S
Sbjct: 1381 FNGVLQPNSNLVGFWHWMHSLTPFTYLIEGLLSDLVHGLPVECKS 1425


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 254 KASYISARTPVF*VSIGVVYY 192
           +A Y   R P F  SIGV+YY
Sbjct: 609 QAVYRDGRNPTFWCSIGVLYY 629


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 298 VTQATAAHILHARRSPLSKDRMQQNRRNLSQWLQ 399
           +++ T+   + A   P+SKD    +RRN+S WLQ
Sbjct: 1   MSEETSIPGIIASTPPISKD----SRRNVSHWLQ 30


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 252 LNSEVCVLAEDPCTFGHTSNCG 317
           L SE CV  ED C + HT   G
Sbjct: 446 LKSEFCVGGEDCCVYIHTLEKG 467


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 331 ARRSPLSKDRMQQNRRNLSQWLQNRK 408
           A+   L+K+++ +   NLS+WL  RK
Sbjct: 418 AKEYSLTKEQLLERYPNLSKWLSLRK 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,197
Number of Sequences: 5004
Number of extensions: 41490
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)