Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    29   1.7  
08_01_0746 - 6959210-6959344,6959467-6959776,6960102-6960589           28   4.0  
01_07_0205 - 41978437-41980599,41980805-41981215                       28   4.0  
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609     27   6.9  
06_01_0242 + 1833094-1833127,1833358-1833442,1833853-1833902,183...    27   9.1  

>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 319 HILHARRSPLSKDRMQQNRRNLSQWLQNRKHQLLISTR 432
           HIL  R + ++ D  + + + LS+WLQ++    LIS++
Sbjct: 308 HILPCRPTGVTLDIKKSSHKKLSKWLQSKSSAGLISSK 345


>08_01_0746 - 6959210-6959344,6959467-6959776,6960102-6960589
          Length = 310

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 516 HVRTCRHMVSSRQKKLRCWAEPG 448
           HV T R  V  R     CW+EPG
Sbjct: 262 HVETERRQVFGRDPYFACWSEPG 284


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 358 RMQQNRRNLSQWLQNRKHQLLISTRPLTTNPRFRPATEFLLAGTHHMTARPHM 516
           R Q ++ N ++W   R H L+  T  L +N  F      ++ G+ H+ +  HM
Sbjct: 431 RAQPSQSNRTKW---RMHDLVHDTAVLISNVEFTTVLSSVMFGSPHVQSLHHM 480


>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
          Length = 475

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 128 RLKGILSQDKYGLEDCCSSFRHNILRRWILKIRAYVQRYRMP*QRSLRACRRSVHV 295
           R KG+ S  + G ++CC + +   LRR +  +RA++   R       RA    V V
Sbjct: 187 RAKGLFSFYEDGHQECCRARKVRPLRRALRGLRAWITGQRKDQSPGTRAAIPVVQV 242


>06_01_0242 +
           1833094-1833127,1833358-1833442,1833853-1833902,
           1834854-1834952,1835545-1835679,1835720-1835784,
           1835971-1836050,1836822-1836910,1836989-1837017
          Length = 221

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 12  VHFEQTNEHNIKR*RYASSVIRLETKVDC*NIGFGSSRFVLKGSCH 149
           +H E+ N+  +    +  + + +  + D  N+  G+ RF+L+   H
Sbjct: 23  IHLEEVNDSTLNESSFPCTAMTISWRTDRRNLITGTERFMLRNVSH 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,185
Number of Sequences: 37544
Number of extensions: 279250
Number of successful extensions: 771
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)