Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       29   1.8  
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_49322| Best HMM Match : REV (HMM E-Value=4.5)                       27   7.1  
SB_44678| Best HMM Match : MoCF_biosynth (HMM E-Value=1.5e-19)         27   7.1  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 424 KSTVGVCGFGAIGLGCAGSAACDPSTRD 341
           KS    C  G  G+ CA S  CDPS  D
Sbjct: 720 KSCKDPCPAGRYGMMCASSCRCDPSKTD 747


>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 342 TSSCM*DMCRSCLCDQTCTDLRQARRLRC 256
           T SCM D+CR CL D    +   +R +RC
Sbjct: 33  TLSCMHDLCRKCLEDMAARE--SSRVIRC 59


>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 367 QNRRNLSQWLQNRKHQLLISTRPLTTNPRFRPATEFLLAG 486
           QNR  L + L +    LLI+ +P   +P+ +PAT    +G
Sbjct: 475 QNRHRLRKDLDDTWIALLIANQPTPRSPKAKPATILSYSG 514


>SB_49322| Best HMM Match : REV (HMM E-Value=4.5)
          Length = 156

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +2

Query: 143 LSQDKYGLEDCCSSF----RHNILRRWILKIRAYVQRYRMP*QRSLRACRRSVH-VWSHK 307
           L  +K GL DCC+ F       +L ++IL+                +A + + H V S+ 
Sbjct: 80  LVNEKRGLHDCCAEFYWPPLRRLLEQYILETTGETVNLLEDSNARYKAVQENTHLVVSYF 139

Query: 308 QLRHISYMQEEVPCRR 355
            +R  +Y +  V C R
Sbjct: 140 DMRTRTYHENVVTCVR 155


>SB_44678| Best HMM Match : MoCF_biosynth (HMM E-Value=1.5e-19)
          Length = 348

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 295 LVTQATAA-HILHARRSPLSKDRMQQNRRNLSQWLQNRKHQLLIST 429
           LV + TAA H L AR   + KD   Q    L +W+++   Q++IST
Sbjct: 34  LVDRLTAAGHKLAARA--IVKDEKLQLSAQLKEWIEDSNIQVIIST 77


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 228  RTCRDIGCLNSEVCVLAEDPCTFGHTSNCGTYPTCKKKSLVEGSH 362
            + C  I C + ++C + + P + G         T KK+ L E +H
Sbjct: 2962 KNCFAISCFSPDLCHVTDFPTSNGDVEISTMVKTVKKEKLPEETH 3006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,259
Number of Sequences: 59808
Number of extensions: 329703
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)