Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.82 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.82 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 368 CCMRSFDKGLLLACRICAAVACVTKRARIFGKHADFAVKASYISARTPV 222
           C ++ F  G+  +    A +    + ARIF   +  AV+  YIS  + V
Sbjct: 580 CILQRFGVGVSFSAVYGALLTKTNRIARIFDSASRTAVRPRYISPASQV 628


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 368 CCMRSFDKGLLLACRICAAVACVTKRARIFGKHADFAVKASYISARTPV 222
           C ++ F  G+  +    A +    + ARIF   +  AV+  YIS  + V
Sbjct: 670 CILQRFGVGVSFSAVYGALLTKTNRIARIFDSASRTAVRPRYISPASQV 718


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 419 NSWCLRFWSHWLRLR 375
           N W + FW H  + R
Sbjct: 423 NPWFVEFWEHHFQCR 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,035
Number of Sequences: 438
Number of extensions: 2905
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)