Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71350.1 68414.m08235 eukaryotic translation initiation facto...    30   0.82 
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.3  
At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing ...    28   3.3  
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta...    27   5.8  

>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
           SUI1 family protein weak similarity to SP|P41214 Ligatin
           (Hepatocellular carcinoma-associated antigen 56) {Homo
           sapiens}; contains Pfam profile PF01253: Translation
           initiation factor SUI1
          Length = 597

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 313 AAHILHARRSPLSKDRMQQNRRNLSQWLQNRKHQLLISTR 432
           A H+L  R S L+ D  + + + LS+WLQ++    +IS +
Sbjct: 306 ANHVLPCRPSGLTLDIKKSSHKKLSKWLQSKASGGMISVK 345


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +2

Query: 98  LKYWI----WKFTFRLKGILSQDKYGLEDCCSSFRHNILRRWILKIRAYVQRYRMP*QRS 265
           LKY+I    W ++ +   ILS    GL +   SF  +ILR W L +   + ++  P   S
Sbjct: 269 LKYYIDPDTWTYSIQPAWILS----GLANTFFSFFWDILRDWDLSVFTRIFKFTRPNLFS 324

Query: 266 -LRACRRSVHVW 298
            L   RR V+VW
Sbjct: 325 HLLYGRRWVYVW 336


>At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing
           protein
          Length = 311

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 412 GVCGFGAIGLGCAGSAACDPSTRDFFLHVGYVPQLLV*PNVHGSSASTQTSLLRHP 245
           G     A+GLG     + D +    F++     +  +   + GSS S+ ++LL+HP
Sbjct: 163 GFSSLSALGLGLPHQMSHDHTINGSFINNSTTNKPFLLSGLFGSSMSSSSTLLQHP 218


>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
           Lycopersicon esculentum, PATX:E325797
          Length = 595

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 337 RSPLSKDRMQQNRRNLSQWLQNRKHQLLISTRP 435
           RSP++      +RRN  + L NR +  L+S+ P
Sbjct: 41  RSPITNPSDNNDRRNKPKTLHNRTNHTLVSSPP 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,587
Number of Sequences: 28952
Number of extensions: 222173
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)