Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    31   0.10 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   1.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   3.0  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.0  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   3.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   3.9  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   3.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   3.9  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   5.2  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   6.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   6.8  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 416 YDPSSLPPTKQELLQQIKRTVFICNIWCNAH 324
           +DP  L   K +LL+    T ++ N+W N H
Sbjct: 43  HDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 464 KSKNDNEKILKQKIVGYDPSSLPPTKQELLQQIKRTVF 351
           ++ +DNEK+ K++ V YD       K +  Q ++ ++F
Sbjct: 41  ETADDNEKLFKKECVAYDAGVYTSNKSKGSQTLRWSIF 78


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 482 LFEKGYKSKNDNEKILKQKIVGYDPSSLPPTKQELLQQIKRTVFICNI 339
           L +  Y SK     +    ++GY P S    K +L+    RTV+I NI
Sbjct: 283 LKQPAYFSKGQVGVVGGYPVMGYPPPSPVLQKPDLIMTGNRTVYIGNI 330


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 209 KIILQMMDFGDHQTNNIHIYHQ 274
           K ++Q M  GD  T+N+  YH+
Sbjct: 82  KFLIQSMAIGDADTSNVENYHE 103


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -1

Query: 482 LFEKGYKSKNDNEKILKQKIVGYDPSSLPP-TKQELLQQIKRTVFICNIWCNAHMRCPTE 306
           LF  G+ S +    I   K    D S + P    +L+ +I + + + ++    H+     
Sbjct: 423 LFHAGFASASLLRLIYAAKTKEVDTSIVQPKVLNDLVTKIWKWLLVISV-DQYHLATKFA 481

Query: 305 KLPENFGWTIIDGKYEYYWFDGPQSP 228
              + +  T+ +G  E  WF GP  P
Sbjct: 482 NYLKEYQKTVNEGTAESTWFKGPLRP 507


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 340  ILQMNTVRLICCNNSCFVGGKLEGSYPTIFCF 435
            ILQ+N+ R I      F+G  L+G Y ++ CF
Sbjct: 1142 ILQLNSARKI------FIGYMLDGFYQSVICF 1167


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 377 TILVLLVANWKDHILRFFVLKFFHCHFLIYTL 472
           TILV +V+NWK     FF +      FL YTL
Sbjct: 359 TILVYMVSNWKHRFPVFFPI------FLCYTL 384


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 263 IYHQLLSIQNFLAIFPWGTACVHYTIY 343
           ++  LLSI N   +F W +  V Y IY
Sbjct: 433 VFDWLLSISNLATLFVWLSINVSYIIY 459


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 234 LGTIKPIIFIFTINYCPSKIFWQFFRGAPHVCITPYIADEYS 359
           LG+++ +I I T +Y      W F+     VCI P  A  Y+
Sbjct: 573 LGSLERMIAILTEHYAGK---WPFWMSPRQVCIIPVSAAAYN 611


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 303 FFRGAPHVCIT--PYIADEYSSFNLLQQ 380
           FFRG    C+   PY A ++++FN+L+Q
Sbjct: 75  FFRGNGTNCLRAFPYGAVQFATFNMLKQ 102


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 259 SYLPSIIVHPKFSGNFSVGHRMCALHHILQMNTVRLICCNNSCFVGGKLEGSYPTIFCFK 438
           SY+PS  V+P  +  +++G+          MN+V   C  +  F  G L G+   +F   
Sbjct: 77  SYIPSWFVNPLLAARWTIGYLSWE-----SMNSVS--CSISKRF--GTLSGALFILFSCA 127

Query: 439 IFSLSFFDLYPFSN 480
            F L ++   P SN
Sbjct: 128 QFHLVYYMSRPLSN 141


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 419  LRFFVLKFFHCHFLIYTLFQI 481
            L FF   FF CH L++ +  +
Sbjct: 1772 LNFFAADFFLCHLLLFLMLPV 1792


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 479  FEKGYKSKNDNEKILKQKIVGYDPSSLPPTKQELLQQIKR 360
            FEK Y+       ++   +VG  P SL  TK++ L ++ +
Sbjct: 1112 FEKNYEKSKKGPDVIANALVGGIPLSL-KTKEDSLYELSK 1150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,597
Number of Sequences: 5004
Number of extensions: 33697
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)