Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290...    31   0.56 
11_01_0126 + 1021224-1021256,1021717-1022486,1022582-1022667,102...    29   2.3  
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636     28   4.0  
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482...    28   5.2  
01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405...    27   6.9  
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296...    27   9.1  

>08_01_0322 -
           2898272-2898475,2898548-2898730,2898817-2899702,
           2902070-2902374
          Length = 525

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 271 SIIVHPKFSGNFSVGHRMCALHHILQMNTVRLICCNNSCFVGGKLEGS 414
           S  +H     + S GH +  +HH+ +  ++RL+  +N C     LE S
Sbjct: 85  SFRLHRSTGSSNSSGHLLAIVHHVFECMSLRLMRMSNKCMRPTALEAS 132


>11_01_0126 +
           1021224-1021256,1021717-1022486,1022582-1022667,
           1024240-1024316,1025095-1025190,1025861-1026566,
           1026732-1026775
          Length = 603

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 234 LGTIKPIIFIFTINYCPSKIFWQFF 308
           L  I P+ F   + YC SK +W+ F
Sbjct: 22  LSAIAPLYFALVLGYCSSKRWWRIF 46


>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
          Length = 950

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 256 IIGLMVPKVHHLKNYLLTYKSQISRVKKV-KQMKMITMLVANI 131
           I G+M+P + HL    + +K  ++ VKK+ K +K+ +   +N+
Sbjct: 588 IEGIMLPHLAHLFGKFMLHKDDLNNVKKISKLLKLFSSNKSNL 630


>02_02_0455 +
           10445417-10446931,10447370-10447903,10448198-10448278,
           10448699-10448770,10449643-10449669
          Length = 742

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 234 LGTIKPIIFIFTINYCPSKIFWQFFR 311
           LGT++P    FT+N   + IFW FF+
Sbjct: 352 LGTLEP----FTVNCLQNDIFWDFFK 373


>01_01_0549 -
           4051257-4051709,4051967-4052075,4053194-4053252,
           4053339-4053445,4053711-4053867,4054110-4054169,
           4055396-4055524,4056027-4056074,4057148-4057214,
           4057948-4058006
          Length = 415

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 305 KLPENFG-WTIIDGKYEYYWFDG 240
           +L  N G W ++D  YEY+ +DG
Sbjct: 213 ELCRNAGAWLVVDNTYEYFMYDG 235


>04_01_0234 +
           2963364-2963520,2963931-2964053,2964134-2964205,
           2964709-2964979,2965301-2965380,2966075-2967292,
           2968137-2968315
          Length = 699

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 370 KLNELYSSAIYGVMHT-CGAPRKNCQKILDGQ 278
           K  EL+   I  ++H  CGA  KNC  ++DG+
Sbjct: 257 KYPELHRLVIKHMLHEPCGALNKNCACMVDGE 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,071
Number of Sequences: 37544
Number of extensions: 193205
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)