Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.36 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.47 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 479 FEKGYKSKNDNEKILKQKIVGYDPSSLPPTKQELLQ 372
           F+K Y S+++N  IL   IVG+   S   +  EL++
Sbjct: 261 FKKIYMSRHENVSILYADIVGFTAISSTYSASELVK 296


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 391 QNKNCCNKLNELYSSAIYGVMHTCG---APRKNCQKILDGQ 278
           Q KN    LNEL S A+Y V+   G   AP       +DGQ
Sbjct: 33  QPKNAVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQIDGQ 73


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 271 SIIVHPKFSGNFSVGHRMCAL 333
           +++ +P  SGN+S    MCA+
Sbjct: 183 NLVEYPPESGNYSADSAMCAM 203


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 394 QQNKNCCNKLNELYSSAIYGVMHTCGAPRKNCQKIL 287
           Q+N   C++++E YSS        C    +NC++ L
Sbjct: 650 QENVQLCSEISESYSS---NNKTLCKCDAQNCRRYL 682


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 FGDHQTNNIHIYHQLLSIQNFLAI 304
           + ++Q+N   ++HQLL  + F+ +
Sbjct: 15  WNNYQSNMTSVFHQLLQTEAFVDV 38


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 467 YKSKNDNEKI 438
           Y SKNDNE++
Sbjct: 82  YTSKNDNEEV 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,269
Number of Sequences: 438
Number of extensions: 2491
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)