Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306D03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22890.1 68415.m02717 expressed protein  ; expression support...    27   5.8  
At1g80360.1 68414.m09407 aminotransferase class I and II family ...    27   5.8  
At1g20120.1 68414.m02517 family II extracellular lipase, putativ...    27   5.8  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    27   7.7  
At3g46970.1 68416.m05100 starch phosphorylase, putative similar ...    27   7.7  
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    27   7.7  
At1g53550.1 68414.m06076 F-box family protein similar to F-box f...    27   7.7  
At1g32440.1 68414.m04004 pyruvate kinase, putative similar to py...    27   7.7  

>At2g22890.1 68415.m02717 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 274 LMVNMNIIGLMVPKVHHLKNYLLTYKSQISRVKKV 170
           L+V +  IGL+V ++HH+ ++   Y +    V  V
Sbjct: 210 LVVGLQDIGLLVSRIHHMNHHRAPYNNNYCVVSGV 244


>At1g80360.1 68414.m09407 aminotransferase class I and II family
           protein low similarity to GI:14278621 Aromatic
           Aminotransferase from Pyrococcus horikoshii
          Length = 394

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 284 WTIIDGKYEYYWFDG 240
           W I+D  YEY+ +DG
Sbjct: 200 WLIVDNTYEYFMYDG 214


>At1g20120.1 68414.m02517 family II extracellular lipase, putative
           similar to family II lipase EXL3 GI:15054386, SP|P40602
           Anther-specific proline-rich protein APG precursor
           {Arabidopsis thaliana}; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 402

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 370 CCNNSCFVGGKLEGSYPTIFCFKIFSLSFFDLYPFSNNSYR 492
           CC       G L   Y ++ C  + S  F+D Y  +  +Y+
Sbjct: 345 CCGTGLLELGPLCNKYTSLLCKNVSSFMFWDSYHPTERAYK 385


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 485 ELFEKGYKSKNDNEKILKQKIVGYDPSSLPPTKQELLQQIKRTVFICNIWCNAHMRCPTE 306
           +L +K   S +DN+K+L+++     PSSL         +I++++ +           P E
Sbjct: 65  KLLKKNNNSLDDNQKLLRRRSFDRPPSSLTSPSTSASPRIQKSLNVSPSRSRDRPAVPRE 124

Query: 305 K 303
           K
Sbjct: 125 K 125


>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
           alpha-glucan phosphorylase, H isozyme SP:P32811 from
           [Solanum tuberosum]
          Length = 841

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 259 NIIGLMVPKVHHLKNYLLTYKSQISRVKKVKQMK 158
           ++  + V ++H  K  L+     + R KK+K+MK
Sbjct: 565 SLFDIQVKRIHEYKRQLMNILGVVYRFKKLKEMK 598


>At2g34680.1 68415.m04260 leucine-rich repeat family protein contains
            leucine rich repeat (LRR) domains, Pfam:PF00560;
            identical to cDNA hypothetical protein (AIR9) mRNA,
            partial cds GI:3695020
          Length = 1661

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 284  WTIIDGKYEYYWFDGPQSP---SFEELSSDL 201
            W+   G  +Y WF  P+S    S+E LSS++
Sbjct: 1361 WSKYKGDIQYQWFRSPESGDKISYEALSSEI 1391


>At1g53550.1 68414.m06076 F-box family protein similar to F-box
           family protein TIGR_Ath1:At3g23960
          Length = 408

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 298 GNFSVGHRMCALHHILQMNTVRLICCNNSCFVGGKLEGSYPTIFCFKIFSLSF 456
           GN S  +  C + H L  ++   IC N   +   +L+    TI CF + +  F
Sbjct: 217 GNISWRNTQCCVVHYLLEDSG--ICINGVLYYPARLDNRKYTIVCFDVMTEKF 267


>At1g32440.1 68414.m04004 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 571

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 232 VHHLKNYLLTYKSQISRVKKVKQMKMITML 143
           VH LKNYL T  + IS + K++    I  L
Sbjct: 295 VHELKNYLKTCSADISVIVKIESADSIKNL 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,281,252
Number of Sequences: 28952
Number of extensions: 168284
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)